Variant report

Variant	rs28508243
Chromosome Location	chr7:50161691-50161692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10225094	0.86[YRI][hapmap]
rs10228836	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10235301	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs10236637	1.00[YRI][hapmap]
rs10241289	0.81[ASN][1000 genomes]
rs10250629	1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs10260654	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs10267578	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1032990	0.91[YRI][hapmap]
rs11185600	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];0.98[TSI][hapmap];0.82[ASN][1000 genomes]
rs11971651	0.89[CHB][hapmap]
rs11980886	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12667606	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12672941	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12673071	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap];0.95[TSI][hapmap];0.82[ASN][1000 genomes]
rs12718245	0.81[ASN][1000 genomes]
rs12718246	0.82[ASN][1000 genomes]
rs13229373	0.89[CHB][hapmap]
rs13239674	0.83[CHB][hapmap]
rs13239786	0.89[CHB][hapmap]
rs13241637	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs13247946	0.87[CHB][hapmap]
rs1384634	0.82[CHB][hapmap]
rs1396280	0.89[CHB][hapmap]
rs1456906	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap];0.95[TSI][hapmap];0.82[ASN][1000 genomes]
rs1601033	0.89[CHB][hapmap]
rs17133694	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17133709	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1870030	0.82[ASN][1000 genomes]
rs1911754	0.97[LWK][hapmap];0.80[MKK][hapmap];0.92[YRI][hapmap]
rs1911756	1.00[YRI][hapmap]
rs1982535	0.81[ASN][1000 genomes]
rs2220065	0.89[CHB][hapmap]
rs2247628	0.97[LWK][hapmap];0.80[MKK][hapmap];0.88[YRI][hapmap]
rs34733935	0.82[ASN][1000 genomes]
rs34810093	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34984574	0.82[ASN][1000 genomes]
rs35254219	0.82[ASN][1000 genomes]
rs35570047	0.82[ASN][1000 genomes]
rs36129824	0.82[ASN][1000 genomes]
rs3778764	0.89[CHB][hapmap]
rs3891340	0.82[ASN][1000 genomes]
rs4092362	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs4496918	0.82[ASN][1000 genomes]
rs6583408	0.89[CHB][hapmap]
rs6583409	0.89[CHB][hapmap]
rs6943189	0.82[ASN][1000 genomes]
rs6944097	0.89[CHB][hapmap]
rs6968612	0.89[CHB][hapmap]
rs6969018	0.85[YRI][hapmap]
rs7786619	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7788998	0.83[YRI][hapmap]
rs7797137	0.89[CHB][hapmap]
rs7798067	0.89[CHB][hapmap]
rs7800478	0.82[ASN][1000 genomes]
rs7805656	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];0.98[TSI][hapmap];0.82[ASN][1000 genomes]
rs998928	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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