Variant report

Variant	rs28510585
Chromosome Location	chr10:45572732-45572733
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11239349	0.97[ASN][1000 genomes]
rs12252994	0.92[ASN][1000 genomes]
rs12570593	0.92[ASN][1000 genomes]
rs55648726	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs60197913	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73291619	0.86[ASN][1000 genomes]
rs7907860	0.92[ASN][1000 genomes]
rs9663396	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831848	chr10:45490176-45667670	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv971917	chr10:45547355-45595482	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45570400-45573200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr10:45570600-45573000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:45570600-45573400	Enhancers	Fetal Kidney	kidney
4	chr10:45570800-45573000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:45571000-45573000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:45571200-45572800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:45571200-45572800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr10:45571200-45573000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:45571400-45573200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:45571400-45573200	Enhancers	Primary hematopoietic stem cells	blood
11	chr10:45571600-45572800	Enhancers	Fetal Heart	heart
12	chr10:45571600-45573000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr10:45572000-45572800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr10:45572200-45572800	Enhancers	Colon Smooth Muscle	Colon
15	chr10:45572200-45573000	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr10:45572200-45573000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:45572400-45572800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:45572600-45573200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:45572600-45577400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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