Variant report

Variant	rs28513741
Chromosome Location	chr15:82307023-82307024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11073027	0.87[EUR][1000 genomes]
rs11630156	0.87[EUR][1000 genomes]
rs11853590	0.80[ASN][1000 genomes]
rs28565868	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28652750	0.82[EUR][1000 genomes]
rs28661931	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2867552	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28729105	0.86[EUR][1000 genomes]
rs34261278	0.87[EUR][1000 genomes]
rs4778960	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4778966	0.87[EUR][1000 genomes]
rs57570430	0.91[ASN][1000 genomes]
rs7175143	0.85[EUR][1000 genomes]
rs7175788	0.85[EUR][1000 genomes]
rs73439254	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82305800-82307600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr15:82306000-82307400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr15:82306000-82307400	Weak transcription	Fetal Muscle Leg	muscle
4	chr15:82306200-82307400	Weak transcription	Adipose Nuclei	Adipose
5	chr15:82307000-82310400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links