Variant report
| Variant | rs28729105 |
|---|---|
| Chromosome Location | chr15:82321006-82321007 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:82313123..82316387-chr15:82317939..82321630,4 | K562 | blood: | |
| 2 | chr15:82319110..82321365-chr15:82323956..82326070,2 | K562 | blood: | |
| 3 | chr15:82313752..82316184-chr15:82319233..82321630,2 | K562 | blood: | |
| 4 | chr15:82319183..82322755-chr15:82336037..82338445,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000222521 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs11073027 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs11630156 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs11638911 | 0.85[EUR][1000 genomes] |
| rs11639022 | 1.00[ASN][1000 genomes] |
| rs12915133 | 1.00[ASN][1000 genomes] |
| rs12915421 | 1.00[ASN][1000 genomes] |
| rs17267218 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17267289 | 0.83[EUR][1000 genomes] |
| rs28513741 | 0.86[EUR][1000 genomes] |
| rs28652750 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34261278 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs4778663 | 1.00[ASN][1000 genomes] |
| rs4778964 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4778966 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs72747943 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833067 | chr15:82234980-82450485 | Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 2 | esv2422504 | chr15:82293064-82426400 | Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:82308200-82331600 | Weak transcription | Fetal Brain Female | brain |
