Variant report

Variant	rs17267289
Chromosome Location	chr15:82314395-82314396
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:82312538..82315689-chr15:82336209..82340821,5	MCF-7	breast:
2	chr15:82308202..82314429-chr15:82332197..82339418,7	K562	blood:
3	chr15:82307584..82309958-chr15:82313085..82314859,2	K562	blood:
4	chr15:82278989..82281635-chr15:82313309..82316158,2	K562	blood:
5	chr15:82313985..82316062-chr15:82329873..82331657,2	MCF-7	breast:
6	chr15:82313752..82316184-chr15:82319233..82321630,2	K562	blood:
7	chr15:82313123..82316387-chr15:82317939..82321630,4	K562	blood:
8	chr15:82313172..82315891-chr15:82338607..82340341,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000222521	Chromatin interaction
ENSG00000183496	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11073027	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11630156	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11638911	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439097	0.81[ASN][1000 genomes]
rs17267218	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17352522	0.86[CHB][hapmap]
rs2867552	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs28729105	0.83[EUR][1000 genomes]
rs34261278	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4325512	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs4778960	0.85[EUR][1000 genomes]
rs4778964	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4778966	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61297607	0.98[ASN][1000 genomes]
rs7175143	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7175788	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74028479	0.98[ASN][1000 genomes]
rs74028483	0.81[ASN][1000 genomes]
rs9788775	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82308200-82331600	Weak transcription	Fetal Brain Female	brain
2	chr15:82308600-82315000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr15:82310000-82315400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr15:82310600-82315200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:82311200-82315200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:82311400-82315000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr15:82312400-82315000	Enhancers	K562	blood
8	chr15:82313000-82315000	Enhancers	Ovary	ovary
9	chr15:82313200-82314800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:82313200-82315000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:82313200-82315000	Enhancers	Fetal Muscle Leg	muscle
12	chr15:82313200-82315200	Enhancers	HMEC	breast
13	chr15:82313400-82315000	Enhancers	HSMMtube	muscle
14	chr15:82313400-82315200	Enhancers	Placenta	Placenta
15	chr15:82313600-82314400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr15:82313800-82314800	Enhancers	NHEK	skin
17	chr15:82314000-82314600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:82314000-82314800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:82314000-82315000	Enhancers	HSMM	muscle
20	chr15:82314200-82314400	Enhancers	Fetal Muscle Trunk	muscle
21	chr15:82314200-82314400	Enhancers	Fetal Stomach	stomach

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