Variant report

Variant	rs12439097
Chromosome Location	chr15:82330247-82330248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11073027	0.81[ASN][1000 genomes]
rs11630156	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11638911	0.81[ASN][1000 genomes]
rs17267218	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17267289	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs34261278	0.81[ASN][1000 genomes]
rs4325512	1.00[CHB][hapmap]
rs4778964	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4778966	0.81[ASN][1000 genomes]
rs61297607	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74028479	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74028483	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9788775	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82308200-82331600	Weak transcription	Fetal Brain Female	brain
2	chr15:82324000-82333200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:82325000-82331600	Weak transcription	K562	blood
4	chr15:82325000-82332600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr15:82326600-82332400	Weak transcription	Brain Germinal Matrix	brain
6	chr15:82327200-82332800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:82327400-82335000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:82327600-82334400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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