Variant report

Variant	rs61297607
Chromosome Location	chr15:82309703-82309704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11073027	0.98[ASN][1000 genomes]
rs11630156	0.98[ASN][1000 genomes]
rs11638911	0.98[ASN][1000 genomes]
rs12439097	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17267218	0.98[ASN][1000 genomes]
rs17267289	0.98[ASN][1000 genomes]
rs34261278	0.98[ASN][1000 genomes]
rs4325512	0.90[ASN][1000 genomes]
rs4778964	0.98[ASN][1000 genomes]
rs4778966	0.98[ASN][1000 genomes]
rs74028479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74028483	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9788775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82307000-82310400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:82307600-82310200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr15:82308200-82331600	Weak transcription	Fetal Brain Female	brain
4	chr15:82308600-82315000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:82308800-82313600	Enhancers	Primary hematopoietic stem cells	blood
6	chr15:82309600-82310200	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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