Variant report

Variant	rs4778964
Chromosome Location	chr15:82312343-82312344
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:82308202..82314429-chr15:82332197..82339418,7	K562	blood:
2	chr15:82310896..82314254-chr15:82337852..82341283,3	K562	blood:
3	chr15:81615024..81616678-chr15:82311523..82313101,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000222521	Chromatin interaction
ENSG00000172345	Chromatin interaction
ENSG00000183496	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11073027	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11630156	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11638911	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439097	0.81[ASN][1000 genomes]
rs17267218	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17267289	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17352522	0.85[CHB][hapmap]
rs28565868	0.80[EUR][1000 genomes]
rs28652750	0.81[EUR][1000 genomes]
rs2867552	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs28729105	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34261278	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4325512	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs4778960	0.88[EUR][1000 genomes]
rs4778966	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61297607	0.98[ASN][1000 genomes]
rs7175143	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7175788	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs74028479	0.98[ASN][1000 genomes]
rs74028483	0.81[ASN][1000 genomes]
rs9788775	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82308200-82331600	Weak transcription	Fetal Brain Female	brain
2	chr15:82308600-82315000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr15:82308800-82313600	Enhancers	Primary hematopoietic stem cells	blood
4	chr15:82310000-82315400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr15:82310600-82315200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:82311000-82313200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:82311200-82315200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:82311400-82315000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr15:82312000-82312400	Weak transcription	K562	blood

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