Variant report

Variant	rs17352522
Chromosome Location	chr15:82331499-82331500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11630156	0.86[CHB][hapmap]
rs17267218	0.86[CHB][hapmap]
rs17267289	0.86[CHB][hapmap]
rs4325512	0.86[CHB][hapmap]
rs4778956	0.86[GIH][hapmap]
rs4778964	0.85[CHB][hapmap]
rs957942	0.87[GIH][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap]
rs9788775	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17352522	ETFA	cis	cerebellum	SCAN
rs17352522	MTHFS	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82308200-82331600	Weak transcription	Fetal Brain Female	brain
2	chr15:82324000-82333200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:82325000-82331600	Weak transcription	K562	blood
4	chr15:82325000-82332600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr15:82326600-82332400	Weak transcription	Brain Germinal Matrix	brain
6	chr15:82327200-82332800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:82327400-82335000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:82327600-82334400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:82330400-82333800	Weak transcription	NH-A	brain
10	chr15:82331000-82332600	Weak transcription	Fetal Stomach	stomach
11	chr15:82331000-82332800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr15:82331400-82333200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:82331400-82335200	Weak transcription	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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