Variant report

No.	Distal block	Cell Line	Cell type
1	chr15:82307584..82309958-chr15:82313085..82314859,2	K562	blood:
2	chr15:82296692..82300305-chr15:82304336..82308281,3	K562	blood:
3	chr15:82299189..82303626-chr15:82305712..82309080,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259622	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11073027	0.89[ASN][1000 genomes]
rs11630156	1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs11638911	0.89[ASN][1000 genomes]
rs12902481	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs12902907	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs17267218	1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs17267289	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17352522	0.86[CHB][hapmap]
rs34261278	0.89[ASN][1000 genomes]
rs34593711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34913882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35573193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4778964	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs4778966	0.89[ASN][1000 genomes]
rs61297607	0.90[ASN][1000 genomes]
rs67548148	0.90[EUR][1000 genomes]
rs67817019	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67824562	0.95[EUR][1000 genomes]
rs67984036	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7162970	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7171792	0.83[CEU][hapmap]
rs74028479	0.90[ASN][1000 genomes]
rs8031443	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9788775	1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4325512	RP11-276M12.1	cis	lung	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82307000-82310400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:82307400-82307800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr15:82307400-82307800	Enhancers	Adipose Nuclei	Adipose
4	chr15:82307400-82307800	Enhancers	Fetal Muscle Leg	muscle
5	chr15:82307400-82308200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:82307400-82308200	Enhancers	Fetal Brain Female	brain
7	chr15:82307600-82307800	Enhancers	HSMMtube	muscle
8	chr15:82307600-82310200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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