Variant report
| Variant | rs12902907 |
|---|---|
| Chromosome Location | chr15:82320204-82320205 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:82313123..82316387-chr15:82317939..82321630,4 | K562 | blood: | |
| 2 | chr15:82319110..82321365-chr15:82323956..82326070,2 | K562 | blood: | |
| 3 | chr15:82313752..82316184-chr15:82319233..82321630,2 | K562 | blood: | |
| 4 | chr15:82319183..82322755-chr15:82336037..82338445,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000222521 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs12902481 | 0.91[CEU][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs13379788 | 0.89[ASN][1000 genomes] |
| rs34082296 | 0.90[AFR][1000 genomes] |
| rs34590775 | 0.80[EUR][1000 genomes] |
| rs34593711 | 0.83[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs34913882 | 0.83[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs35573193 | 0.83[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4325512 | 1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs56407036 | 0.89[ASN][1000 genomes] |
| rs58069813 | 0.89[ASN][1000 genomes] |
| rs60636752 | 0.89[ASN][1000 genomes] |
| rs67548148 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs67817019 | 0.80[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs67824562 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs67984036 | 0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7162970 | 0.81[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7171792 | 0.83[CEU][hapmap] |
| rs74028455 | 0.89[ASN][1000 genomes] |
| rs74028456 | 0.89[ASN][1000 genomes] |
| rs74028457 | 0.89[ASN][1000 genomes] |
| rs8031443 | 1.00[CEU][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs8041457 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833067 | chr15:82234980-82450485 | Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 2 | esv2422504 | chr15:82293064-82426400 | Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:82308200-82331600 | Weak transcription | Fetal Brain Female | brain |
