Variant report

Variant	rs957942
Chromosome Location	chr15:82334048-82334049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:82334046-82334076	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:82095888..82097859-chr15:82332803..82335499,2	K562	blood:
2	chr15:82251555..82253292-chr15:82333224..82334972,2	MCF-7	breast:
3	chr15:82333925..82335787-chr15:82348964..82351774,2	MCF-7	breast:
4	chr15:82330594..82336594-chr15:82336813..82340577,9	K562	blood:
5	chr15:82332579..82335110-chr15:82342435..82344275,2	K562	blood:
6	chr15:82333605..82336369-chr15:82346217..82348896,2	MCF-7	breast:
7	chr15:82299760..82303058-chr15:82332264..82335755,3	K562	blood:
8	chr15:82328020..82329599-chr15:82331428..82334230,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000222521	TF binding region
ENSG00000259622	Chromatin interaction
ENSG00000183496	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17352522	0.87[GIH][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv827415	chr15:82333348-82340769	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82327400-82335000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr15:82327600-82334400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr15:82331400-82335200	Weak transcription	Thymus	Thymus
4	chr15:82332000-82335400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:82332000-82335400	Weak transcription	Spleen	Spleen
6	chr15:82332200-82334800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:82332200-82335600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr15:82332400-82335400	Weak transcription	HUVEC	blood vessel
9	chr15:82332600-82334200	Enhancers	Fetal Brain Male	brain
10	chr15:82332800-82335000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr15:82333000-82335400	Weak transcription	Right Ventricle	heart
12	chr15:82333000-82335400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr15:82333200-82334200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr15:82333200-82334400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:82333200-82334400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:82333200-82334400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr15:82333200-82335000	Weak transcription	Fetal Lung	lung
18	chr15:82333200-82335200	Weak transcription	Colon Smooth Muscle	Colon
19	chr15:82333400-82334200	Strong transcription	Fetal Muscle Trunk	muscle
20	chr15:82333400-82334800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr15:82333400-82335000	Weak transcription	Fetal Heart	heart
22	chr15:82333400-82335400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr15:82333400-82335400	Weak transcription	Ovary	ovary
24	chr15:82333400-82335600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr15:82333400-82335600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr15:82333400-82336000	Weak transcription	Osteobl	bone
27	chr15:82333600-82334200	Active TSS	Brain Germinal Matrix	brain
28	chr15:82333600-82334200	Active TSS	Fetal Brain Female	brain
29	chr15:82333600-82334400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr15:82333600-82334600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr15:82333600-82334600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr15:82333600-82334600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr15:82333600-82334600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:82333600-82335000	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr15:82333600-82335000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr15:82333600-82335000	Weak transcription	Fetal Thymus	thymus
37	chr15:82333600-82335200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:82333600-82335200	Weak transcription	Fetal Stomach	stomach
39	chr15:82333600-82335400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr15:82333600-82335400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:82333600-82335400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr15:82333600-82335400	Weak transcription	Gastric	stomach
43	chr15:82333600-82335400	Weak transcription	Left Ventricle	heart
44	chr15:82333600-82335400	Weak transcription	Pancreas	Pancrea
45	chr15:82333600-82335400	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr15:82333600-82335600	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr15:82333600-82335600	Weak transcription	Brain Anterior Caudate	brain
48	chr15:82333600-82336400	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr15:82333600-82336400	Weak transcription	Right Atrium	heart
50	chr15:82333600-82336600	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links