The 2.0 version of rSNPBase

Variant report

Variant rs28514698
Chromosome Location chr3:179451887-179451888
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:179391000-179452200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
2 chr3:179399000-179459800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr3:179406200-179503000 Weak transcription Primary T regulatory cells fromperipheralblood blood
4 chr3:179420200-179478800 Weak transcription Rectal Smooth Muscle rectum
5 chr3:179422800-179460600 Weak transcription Duodenum Mucosa Duodenum
6 chr3:179424000-179474800 Weak transcription Fetal Kidney kidney
7 chr3:179424400-179487600 Weak transcription Primary T helper naive cells from peripheral blood blood
8 chr3:179427000-179457600 Weak transcription Thymus Thymus
9 chr3:179428800-179452200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr3:179428800-179456800 Weak transcription HUVEC blood vessel
11 chr3:179428800-179460000 Weak transcription Brain Substantia Nigra brain
12 chr3:179429000-179466200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
13 chr3:179434600-179452200 Weak transcription A549 lung
14 chr3:179435600-179460000 Weak transcription NHDF-Ad bronchial
15 chr3:179436000-179459800 Weak transcription Small Intestine intestine
16 chr3:179437400-179490200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
17 chr3:179437400-179501800 Weak transcription Pancreatic Islets Pancreatic Islet
18 chr3:179438200-179452200 Weak transcription ES-WA7 Cell Line embryonic stem cell
19 chr3:179438400-179489200 Weak transcription ES-I3 Cell Line embryonic stem cell
20 chr3:179439600-179452200 Weak transcription NHEK skin
21 chr3:179439800-179452400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr3:179441000-179484200 Weak transcription Colon Smooth Muscle Colon
23 chr3:179441200-179460600 Weak transcription Brain Cingulate Gyrus brain
24 chr3:179441400-179459800 Weak transcription Hela-S3 cervix
25 chr3:179444200-179460000 Weak transcription Pancreas Pancrea
26 chr3:179444600-179460000 Weak transcription Monocytes-CD14+_RO01746 blood
27 chr3:179444600-179461800 Weak transcription Primary monocytes fromperipheralblood blood
28 chr3:179444800-179462600 Weak transcription iPS-15b Cell Line embryonic stem cell
29 chr3:179446000-179452200 Weak transcription HMEC breast
30 chr3:179446600-179452200 Strong transcription Primary hematopoietic stem cells short term culture blood
31 chr3:179446800-179452000 Strong transcription Breast Myoepithelial Primary Cells Breast
32 chr3:179446800-179465600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
33 chr3:179446800-179466400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr3:179447000-179465600 Strong transcription Fetal Muscle Trunk muscle
35 chr3:179448800-179459600 Weak transcription HSMM muscle
36 chr3:179448800-179460000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
37 chr3:179449000-179457000 Weak transcription Primary T helper naive cells fromperipheralblood blood
38 chr3:179449000-179460000 Weak transcription Fetal Thymus thymus
39 chr3:179449400-179460000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
40 chr3:179449400-179503400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
41 chr3:179449600-179460000 Weak transcription Brain Anterior Caudate brain
42 chr3:179449600-179460200 Weak transcription NH-A brain
43 chr3:179449800-179458000 Weak transcription Rectal Mucosa Donor 29 rectum
44 chr3:179449800-179460200 Weak transcription Gastric stomach
45 chr3:179450000-179452200 Weak transcription Muscle Satellite Cultured Cells --
46 chr3:179450000-179459000 Weak transcription Brain Angular Gyrus brain
47 chr3:179450000-179460000 Weak transcription Brain Inferior Temporal Lobe brain
48 chr3:179450000-179460000 Weak transcription Duodenum Smooth Muscle Duodenum
49 chr3:179450000-179478400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
50 chr3:179450000-179484200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin

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Last update: Aug 31, 2015