Variant report

Variant	rs2851541
Chromosome Location	chr11:49088439-49088440
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11040198	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1847643	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1910836	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1965370	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2026125	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2047941	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2696914	0.90[CEU][hapmap]
rs2696915	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2696923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2696926	1.00[CEU][hapmap]
rs2696935	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2727018	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2727023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2727027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2727028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2727043	0.89[CEU][hapmap]
rs3781713	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4244800	0.89[ASN][1000 genomes]
rs4291676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4335550	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7128740	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759824	chr11:48303671-49185190	Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	esv1828260	chr11:48735614-49162948	Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv427886	chr11:48850348-49185190	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv2758268	chr11:48856977-49185190	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv469956	chr11:48922645-49862647	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv897481	chr11:48987539-49111467	ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv832145	chr11:49002873-49185190	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv897482	chr11:49003921-49111467	ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv897483	chr11:49003921-49120367	ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1054955	chr11:49007476-49138758	Enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv897484	chr11:49042866-49162948	ZNF genes & repeats Enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
12	esv3507647	chr11:49072476-49105274	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
13	esv3507648	chr11:49072476-49105274	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv3497082	chr11:49077426-49105124	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
15	esv3497081	chr11:49077536-49104203	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
16	esv3497083	chr11:49077536-49104203	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv1051896	chr11:49078859-49120388	Enhancers	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
18	esv2421548	chr11:49078871-49103690	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
19	esv2760191	chr11:49078871-49103690	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv554346	chr11:49079350-49095165	Inactive region	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv8818	chr11:49081704-49098520	Enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
22	esv17649	chr11:49085333-49094076	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv442611	chr11:49087981-49103686	Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
24	nsv983012	chr11:49088073-49124095	Enhancers	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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