Variant report

Variant	rs28516760
Chromosome Location	chr4:148644807-148644808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10002113	1.00[AMR][1000 genomes]
rs10003056	1.00[AMR][1000 genomes]
rs10004457	1.00[AMR][1000 genomes]
rs10004995	1.00[AMR][1000 genomes]
rs10005261	1.00[AMR][1000 genomes]
rs10016720	1.00[AMR][1000 genomes]
rs10016881	1.00[AMR][1000 genomes]
rs10019799	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17023769	1.00[AMR][1000 genomes]
rs28438925	1.00[AMR][1000 genomes]
rs28454186	1.00[AMR][1000 genomes]
rs28510261	1.00[AMR][1000 genomes]
rs7699081	1.00[AMR][1000 genomes]
rs9307841	1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148635600-148646800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:148640400-148645800	Weak transcription	GM12878-XiMat	blood
3	chr4:148643800-148646600	Enhancers	Fetal Intestine Large	intestine
4	chr4:148644000-148645000	Enhancers	Adipose Nuclei	Adipose
5	chr4:148644000-148645000	Enhancers	Stomach Mucosa	stomach
6	chr4:148644000-148645200	Enhancers	Fetal Intestine Small	intestine
7	chr4:148644200-148645000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:148644200-148645000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:148644200-148645000	Enhancers	Liver	Liver
10	chr4:148644200-148645000	Enhancers	Fetal Kidney	kidney
11	chr4:148644200-148645000	Enhancers	NHDF-Ad	bronchial
12	chr4:148644400-148645000	Enhancers	Osteobl	bone
13	chr4:148644600-148645000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:148644600-148646000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:148644800-148645000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
16	chr4:148644800-148645000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:148644800-148645800	Weak transcription	HepG2	liver
18	chr4:148644800-148646000	Weak transcription	Gastric	stomach
19	chr4:148644800-148652400	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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