Variant report

Variant	rs9307841
Chromosome Location	chr4:148597221-148597222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:148595149..148597630-chr4:148602026..148603997,2	K562	blood:
2	chr4:148594939..148597432-chr4:148603233..148605445,2	MCF-7	breast:
3	chr4:148596811..148598697-chr4:148604127..148605942,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164169	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28516760	1.00[MKK][hapmap]
rs28542316	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	esv3329646	chr4:148590774-148611959	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148548400-148599800	Weak transcription	Gastric	stomach
2	chr4:148548600-148604400	Weak transcription	Esophagus	oesophagus
3	chr4:148549000-148599800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:148551400-148603600	Weak transcription	Hela-S3	cervix
5	chr4:148554600-148604600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:148556000-148603800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:148556400-148599600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:148557400-148603800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:148557800-148603800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:148558200-148603800	Weak transcription	A549	lung
11	chr4:148558400-148603800	Weak transcription	HUVEC	blood vessel
12	chr4:148559400-148599200	Weak transcription	HMEC	breast
13	chr4:148562800-148603800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:148562800-148604200	Weak transcription	Right Ventricle	heart
15	chr4:148563600-148604400	Weak transcription	Pancreas	Pancrea
16	chr4:148563800-148599800	Weak transcription	Spleen	Spleen
17	chr4:148565000-148602200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr4:148568400-148603800	Weak transcription	Fetal Kidney	kidney
19	chr4:148568800-148600400	Weak transcription	Psoas Muscle	Psoas
20	chr4:148569400-148604000	Weak transcription	Brain Hippocampus Middle	brain
21	chr4:148570200-148599400	Weak transcription	K562	blood
22	chr4:148570400-148604200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr4:148571600-148603800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr4:148575600-148599800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr4:148575600-148604000	Weak transcription	Brain Substantia Nigra	brain
26	chr4:148575800-148599600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:148576400-148603800	Weak transcription	Small Intestine	intestine
28	chr4:148577000-148604400	Weak transcription	Aorta	Aorta
29	chr4:148577200-148604000	Weak transcription	Colonic Mucosa	Colon
30	chr4:148577400-148604600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr4:148577600-148599200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr4:148577600-148599800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr4:148577600-148600200	Weak transcription	Lung	lung
34	chr4:148577600-148603800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr4:148577600-148603800	Weak transcription	Brain Anterior Caudate	brain
36	chr4:148577600-148604200	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr4:148579400-148599600	Weak transcription	HSMMtube	muscle
38	chr4:148579600-148603800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr4:148579600-148603800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr4:148580000-148603800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr4:148580000-148603800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr4:148581200-148599600	Weak transcription	HepG2	liver
43	chr4:148581800-148599200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr4:148581800-148599600	Weak transcription	Thymus	Thymus
45	chr4:148581800-148599800	Weak transcription	Brain Angular Gyrus	brain
46	chr4:148581800-148604600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr4:148582000-148601800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr4:148582200-148599600	Weak transcription	Duodenum Mucosa	Duodenum
49	chr4:148582800-148603800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr4:148583400-148604000	Weak transcription	Fetal Heart	heart

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