Variant report

Variant	rs28516927
Chromosome Location	chr13:110494383-110494384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs10161700	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12017337	1.00[AMR][1000 genomes]
rs60144751	1.00[AMR][1000 genomes]
rs7358943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615218	1.00[AMR][1000 genomes]
rs9583416	1.00[AMR][1000 genomes]
rs9587981	1.00[AMR][1000 genomes]

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110488400-110496200	Weak transcription	Aorta	Aorta
2	chr13:110489600-110497200	Weak transcription	Stomach Mucosa	stomach
3	chr13:110491000-110494800	Enhancers	HSMM	muscle
4	chr13:110492800-110496600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr13:110493000-110495200	Weak transcription	Right Ventricle	heart
6	chr13:110493000-110495600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr13:110493000-110496600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr13:110493000-110497800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr13:110493200-110498600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr13:110493200-110499200	Weak transcription	Right Atrium	heart
11	chr13:110493600-110496200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr13:110493600-110496600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr13:110493600-110496600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr13:110493600-110496600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:110493600-110496600	Weak transcription	Osteobl	bone
16	chr13:110493800-110495000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr13:110493800-110496800	Weak transcription	HMEC	breast
18	chr13:110493800-110497000	Weak transcription	NH-A	brain
19	chr13:110494000-110496000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr13:110494000-110497000	Weak transcription	HSMMtube	muscle
21	chr13:110494200-110494600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links