Variant report

Variant	rs9583416
Chromosome Location	chr13:110344576-110344577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10161700	1.00[AMR][1000 genomes]
rs12017337	1.00[AMR][1000 genomes]
rs28516927	1.00[AMR][1000 genomes]
rs60144751	1.00[AMR][1000 genomes]
rs7358943	1.00[AMR][1000 genomes]
rs9587981	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051686	chr13:110283468-110362954	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110340000-110347400	Weak transcription	Stomach Mucosa	stomach
2	chr13:110341000-110347400	Weak transcription	Fetal Intestine Large	intestine
3	chr13:110341000-110352000	Weak transcription	Fetal Intestine Small	intestine
4	chr13:110342200-110351200	Strong transcription	Dnd41	blood
5	chr13:110344000-110344600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr13:110344200-110344600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr13:110344200-110351800	Weak transcription	Colonic Mucosa	Colon
8	chr13:110344400-110344600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr13:110344400-110344600	Enhancers	Brain Cingulate Gyrus	brain
10	chr13:110344400-110344600	Weak transcription	Small Intestine	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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