Variant report

Variant	rs28522708
Chromosome Location	chr13:86212742-86212743
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10161573	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6650465	1.00[AMR][1000 genomes]
rs7324192	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7338588	1.00[AMR][1000 genomes]
rs7358846	1.00[AMR][1000 genomes]
rs7358965	1.00[AMR][1000 genomes]
rs7989908	1.00[AMR][1000 genomes]
rs7990783	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7991992	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7996296	1.00[AMR][1000 genomes]
rs8000059	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9319169	1.00[AMR][1000 genomes]
rs9319172	1.00[AMR][1000 genomes]
rs9594041	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9594042	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9594045	1.00[AMR][1000 genomes]
rs9602790	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9602791	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9602792	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9602795	1.00[AMR][1000 genomes]
rs9602796	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916866	chr13:85505771-86241562	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1050105	chr13:85524968-86218429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541857	chr13:85524968-86218429	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2752724	chr13:85810499-86320999	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv471162	chr13:85994700-86296819	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv456051	chr13:85994700-86306452	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv562609	chr13:85994700-86306452	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv428608	chr13:86109178-86262577	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv900733	chr13:86192376-86309366	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86212600-86212800	Flanking Active TSS	Adipose Nuclei	Adipose
2	chr13:86212600-86213000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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