Variant report

Variant	rs28522755
Chromosome Location	chr4:31149943-31149944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10008926	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034048	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10517222	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1463843	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1499475	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16867990	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884384	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884398	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884402	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28463037	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28568738	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6448745	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6448746	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6827295	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6856098	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7675916	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7693417	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007884	chr4:31071934-31680623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007145	chr4:31079681-31670541	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv491749	chr4:31103307-31645668	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31142600-31150000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:31143000-31150400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:31143000-31151800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:31145600-31154400	Weak transcription	Fetal Heart	heart
5	chr4:31146600-31150400	Weak transcription	Fetal Lung	lung
6	chr4:31147000-31150400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:31147800-31150600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:31148400-31150400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:31148400-31150400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:31148600-31150800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:31149000-31150200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr4:31149200-31151800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr4:31149400-31150600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr4:31149400-31151400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr4:31149600-31151600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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