Variant report

Variant	rs6448746
Chromosome Location	chr4:31160819-31160820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10008926	0.95[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10034048	0.94[CEU][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10517222	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1463843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1499475	0.89[CEU][hapmap];0.82[AMR][1000 genomes]
rs16867990	0.95[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16884384	0.94[CEU][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16884398	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16884402	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28463037	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28522755	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28568738	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6448745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6448747	0.81[EUR][1000 genomes]
rs6448748	0.83[EUR][1000 genomes]
rs6827295	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6856098	0.87[CEU][hapmap];0.82[AMR][1000 genomes]
rs7675916	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7693417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007884	chr4:31071934-31680623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007145	chr4:31079681-31670541	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv491749	chr4:31103307-31645668	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31158400-31171600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:31159200-31161800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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