Variant report

Variant	rs28522810
Chromosome Location	chr8:19745934-19745935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10101204	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1031046	0.83[EUR][1000 genomes]
rs11204080	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11204081	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11995314	0.83[ASN][1000 genomes]
rs1441775	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1441776	0.92[ASN][1000 genomes]
rs34955499	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35550741	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7822518	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7828612	0.83[EUR][1000 genomes]
rs7844579	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv890631	chr8:19712564-19756813	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv498082	chr8:19722435-19873112	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv32767	chr8:19740189-19873082	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19742800-19747000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr8:19742800-19747000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr8:19744600-19746000	Enhancers	Pancreas	Pancrea
4	chr8:19744800-19746000	Enhancers	Gastric	stomach
5	chr8:19745200-19746000	Enhancers	HepG2	liver
6	chr8:19745200-19747200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr8:19745400-19746000	Weak transcription	Adipose Nuclei	Adipose
8	chr8:19745400-19746200	Enhancers	Stomach Mucosa	stomach
9	chr8:19745400-19748400	Weak transcription	Fetal Lung	lung
10	chr8:19745800-19746000	Enhancers	Lung	lung
11	chr8:19745800-19746400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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