Variant report

Variant	rs7828612
Chromosome Location	chr8:19727932-19727933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1031046	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11204080	0.83[EUR][1000 genomes]
rs11204081	0.90[EUR][1000 genomes]
rs11995314	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1441775	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1441776	0.86[EUR][1000 genomes]
rs28522810	0.83[EUR][1000 genomes]
rs34955499	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35550741	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7822518	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7844579	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv890631	chr8:19712564-19756813	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv498082	chr8:19722435-19873112	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19718600-19732200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:19725200-19731200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:19726400-19732400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:19726800-19730200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:19727200-19728600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr8:19727200-19728800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr8:19727200-19729000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:19727200-19729000	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr8:19727800-19728000	Bivalent Enhancer	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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