Variant report

Variant	rs28523531
Chromosome Location	chr4:120052696-120052697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10029388	0.85[ASN][1000 genomes]
rs10031010	0.91[ASN][1000 genomes]
rs12650325	0.82[ASN][1000 genomes]
rs1809262	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1809263	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1809264	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1903107	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28455602	0.91[ASN][1000 genomes]
rs28580586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28690965	0.91[ASN][1000 genomes]
rs4833608	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4834749	0.82[ASN][1000 genomes]
rs4834752	0.94[EUR][1000 genomes]
rs61391192	0.87[ASN][1000 genomes]
rs62326879	0.83[ASN][1000 genomes]
rs898169	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs898170	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv1007214	chr4:120007913-120112460	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1008115	chr4:120007913-120143849	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv1003827	chr4:120008227-120112460	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv522386	chr4:120009147-120115379	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1012868	chr4:120014630-120464880	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
8	nsv537232	chr4:120014630-120464880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
9	nsv1007619	chr4:120014898-120112460	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120045200-120059200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:120045800-120056200	Weak transcription	HSMMtube	muscle
3	chr4:120049400-120052800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:120051200-120053400	Enhancers	Adipose Nuclei	Adipose
5	chr4:120051400-120054000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:120051400-120054000	Enhancers	Osteobl	bone
7	chr4:120051600-120053000	Enhancers	Stomach Mucosa	stomach
8	chr4:120051600-120053600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:120051600-120054000	Enhancers	NHDF-Ad	bronchial
10	chr4:120051800-120052800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:120051800-120053000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:120051800-120053800	Enhancers	NHLF	lung
13	chr4:120051800-120054000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr4:120052000-120052800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr4:120052000-120052800	Weak transcription	Right Atrium	heart
16	chr4:120052000-120052800	Enhancers	Right Ventricle	heart
17	chr4:120052000-120053400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:120052000-120057200	Weak transcription	Psoas Muscle	Psoas
19	chr4:120052200-120052800	Enhancers	Fetal Intestine Large	intestine
20	chr4:120052200-120056400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:120052400-120052800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr4:120052400-120052800	Enhancers	Fetal Intestine Small	intestine
23	chr4:120052400-120056400	Weak transcription	HUVEC	blood vessel
24	chr4:120052600-120053000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr4:120052600-120053000	Enhancers	Gastric	stomach
26	chr4:120052600-120053200	Enhancers	Fetal Muscle Leg	muscle
27	chr4:120052600-120053200	Enhancers	Left Ventricle	heart
28	chr4:120052600-120053200	Enhancers	Pancreas	Pancrea
29	chr4:120052600-120053800	Enhancers	Aorta	Aorta
30	chr4:120052600-120054000	Enhancers	Fetal Heart	heart
31	chr4:120052600-120055800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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