Variant report

Variant	rs898169
Chromosome Location	chr4:120051946-120051947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr4:120051923-120052118	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
MYOZ2	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1459059	0.83[AFR][1000 genomes]
rs1459060	0.99[ASN][1000 genomes]
rs1459061	0.83[AFR][1000 genomes]
rs1809262	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1809263	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1809264	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1903107	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2389727	0.83[AFR][1000 genomes]
rs2389728	0.99[ASN][1000 genomes]
rs28523531	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28580586	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4833608	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4834752	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6817570	0.83[AFR][1000 genomes]
rs7669449	0.99[ASN][1000 genomes]
rs898170	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9307468	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv1007214	chr4:120007913-120112460	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1008115	chr4:120007913-120143849	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv1003827	chr4:120008227-120112460	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv522386	chr4:120009147-120115379	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1012868	chr4:120014630-120464880	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
8	nsv537232	chr4:120014630-120464880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
9	nsv1007619	chr4:120014898-120112460	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120041200-120052600	Weak transcription	Left Ventricle	heart
2	chr4:120045200-120059200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:120045800-120056200	Weak transcription	HSMMtube	muscle
4	chr4:120048000-120052600	Weak transcription	Gastric	stomach
5	chr4:120049400-120052800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:120049600-120052000	Weak transcription	Right Ventricle	heart
7	chr4:120049800-120052600	Weak transcription	Fetal Heart	heart
8	chr4:120051200-120052000	Enhancers	Right Atrium	heart
9	chr4:120051200-120053400	Enhancers	Adipose Nuclei	Adipose
10	chr4:120051400-120054000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:120051400-120054000	Enhancers	Osteobl	bone
12	chr4:120051600-120052200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:120051600-120052400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr4:120051600-120052400	Enhancers	HUVEC	blood vessel
15	chr4:120051600-120053000	Enhancers	Stomach Mucosa	stomach
16	chr4:120051600-120053600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:120051600-120054000	Enhancers	NHDF-Ad	bronchial
18	chr4:120051800-120052000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:120051800-120052000	Enhancers	Colon Smooth Muscle	Colon
20	chr4:120051800-120052000	Enhancers	Psoas Muscle	Psoas
21	chr4:120051800-120052600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr4:120051800-120052800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:120051800-120053000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr4:120051800-120053800	Enhancers	NHLF	lung
25	chr4:120051800-120054000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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