Variant report

Variant	rs28524014
Chromosome Location	chr4:16152704-16152705
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10004142	1.00[AMR][1000 genomes]
rs10014098	1.00[AMR][1000 genomes]
rs10033234	1.00[AMR][1000 genomes]
rs28375289	0.86[AFR][1000 genomes]
rs28409147	0.86[AFR][1000 genomes]
rs28418606	1.00[AMR][1000 genomes]
rs28525607	1.00[AMR][1000 genomes]
rs28545799	1.00[AMR][1000 genomes]
rs28583383	1.00[AFR][1000 genomes]
rs28583479	0.86[AFR][1000 genomes]
rs28634046	1.00[AMR][1000 genomes]
rs28670993	0.85[AFR][1000 genomes]
rs28754710	1.00[AFR][1000 genomes]
rs57796357	0.86[AFR][1000 genomes]
rs6816631	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6847134	1.00[AMR][1000 genomes]
rs73798722	1.00[AMR][1000 genomes]
rs73798840	1.00[AFR][1000 genomes]
rs73802010	1.00[AMR][1000 genomes]
rs7684779	1.00[AMR][1000 genomes]
rs7690936	1.00[AFR][1000 genomes]
rs9993044	1.00[AMR][1000 genomes]
rs9993432	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9999457	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998299	chr4:16031459-16226466	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16150200-16160800	Weak transcription	Primary B cells from cord blood	blood
2	chr4:16150800-16166600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:16151600-16158000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:16152000-16161600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:16152000-16163800	Weak transcription	Thymus	Thymus
6	chr4:16152400-16154400	Strong transcription	Primary T cells from cord blood	blood
7	chr4:16152600-16152800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:16152600-16152800	Enhancers	Fetal Muscle Trunk	muscle
9	chr4:16152600-16153000	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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