Variant report

Variant	rs73798722
Chromosome Location	chr4:16292974-16292975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10004142	1.00[AMR][1000 genomes]
rs10014098	1.00[AMR][1000 genomes]
rs10033234	1.00[AMR][1000 genomes]
rs28418606	1.00[AMR][1000 genomes]
rs28524014	1.00[AMR][1000 genomes]
rs28525607	1.00[AMR][1000 genomes]
rs28545799	1.00[AMR][1000 genomes]
rs28634046	1.00[AMR][1000 genomes]
rs6816631	1.00[AMR][1000 genomes]
rs6847134	1.00[AMR][1000 genomes]
rs73802010	1.00[AMR][1000 genomes]
rs7684779	1.00[AMR][1000 genomes]
rs9993432	1.00[AMR][1000 genomes]
rs9999457	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537047	chr4:16182060-16375787	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv537048	chr4:16226406-16375787	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16291400-16293400	Enhancers	Fetal Kidney	kidney
2	chr4:16291600-16293200	Enhancers	Adipose Nuclei	Adipose
3	chr4:16291800-16293000	Bivalent Enhancer	HUVEC	blood vessel
4	chr4:16291800-16293200	Enhancers	Fetal Brain Male	brain
5	chr4:16291800-16293400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr4:16292000-16293000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:16292200-16293000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr4:16292200-16293800	Weak transcription	Fetal Stomach	stomach
9	chr4:16292200-16296000	Weak transcription	NHDF-Ad	bronchial
10	chr4:16292400-16295800	Weak transcription	Osteobl	bone
11	chr4:16292600-16293800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr4:16292600-16293800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:16292600-16293800	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:16292600-16295600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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