Variant report

Variant	rs28525154
Chromosome Location	chr4:54401959-54401960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54375519..54377286-chr4:54400053..54402800,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17083057	1.00[AMR][1000 genomes]
rs28452451	1.00[AMR][1000 genomes]
rs57511626	1.00[AMR][1000 genomes]
rs60129843	1.00[AMR][1000 genomes]
rs60576071	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54374400-54421000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr4:54377600-54412200	Weak transcription	Aorta	Aorta
3	chr4:54384600-54424000	Weak transcription	Esophagus	oesophagus
4	chr4:54385200-54408600	Weak transcription	Right Atrium	heart
5	chr4:54385400-54403800	Weak transcription	Left Ventricle	heart
6	chr4:54389600-54404000	Weak transcription	Pancreas	Pancrea
7	chr4:54390400-54430400	Weak transcription	Stomach Mucosa	stomach
8	chr4:54394000-54412400	Weak transcription	Gastric	stomach
9	chr4:54395800-54404000	Weak transcription	Placenta	Placenta
10	chr4:54397200-54408200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr4:54397800-54402600	Weak transcription	Liver	Liver
12	chr4:54398400-54403800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:54399200-54403800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:54399200-54403800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:54399200-54403800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:54399200-54405000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:54399200-54407200	Weak transcription	HSMM	muscle
18	chr4:54399200-54410600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr4:54399400-54402000	Weak transcription	Adipose Nuclei	Adipose
20	chr4:54399400-54402600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr4:54399400-54403400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr4:54399400-54403800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr4:54399400-54405000	Weak transcription	NHDF-Ad	bronchial
24	chr4:54399400-54407200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr4:54399400-54408000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr4:54399400-54408200	Weak transcription	Brain Anterior Caudate	brain
27	chr4:54399400-54408400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr4:54399400-54409000	Weak transcription	Fetal Brain Female	brain
29	chr4:54399600-54402000	Weak transcription	HSMMtube	muscle
30	chr4:54400200-54402000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr4:54400200-54403800	Weak transcription	Fetal Stomach	stomach
32	chr4:54400400-54417000	Weak transcription	Fetal Intestine Small	intestine
33	chr4:54400600-54424400	Weak transcription	Fetal Intestine Large	intestine
34	chr4:54401800-54402000	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr4:54401800-54402200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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