Variant report

Variant	rs2852517
Chromosome Location	chr6:101868479-101868480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1338164	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1415948	0.92[EUR][1000 genomes]
rs1415949	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1415950	0.92[EUR][1000 genomes]
rs1890275	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1890276	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1890277	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2225913	0.92[EUR][1000 genomes]
rs2246465	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2246550	0.92[EUR][1000 genomes]
rs2246551	0.92[EUR][1000 genomes]
rs2518156	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2518184	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2787566	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2788283	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2788284	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2852522	0.92[EUR][1000 genomes]
rs2852523	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes]
rs2852524	1.00[CEU][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101851000-101882000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:101860800-101871000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:101864400-101871000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:101864400-101882800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:101868400-101868800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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