Variant report

Variant	rs28528259
Chromosome Location	chr9:26130190-26130191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12337145	0.90[EUR][1000 genomes]
rs12353464	0.80[EUR][1000 genomes]
rs1434862	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1836463	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2571517	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2571519	0.85[ASN][1000 genomes]
rs59824915	0.97[EUR][1000 genomes]
rs719347	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73431722	0.84[EUR][1000 genomes]
rs73645314	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015883	chr9:25633359-26315286	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv892844	chr9:26062582-26298134	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv892845	chr9:26121103-26179065	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv613925	chr9:26127824-26156363	Flanking Active TSS Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a
5	nsv892846	chr9:26127824-26179065	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26128000-26130400	Enhancers	NHDF-Ad	bronchial
2	chr9:26129200-26134200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:26129800-26131600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:26129800-26131800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr9:26130000-26131400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:26130000-26135000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links