Variant report

Variant	rs2853094
Chromosome Location	chr11:76970699-76970700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10793243	0.89[ASN][1000 genomes]
rs10899366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11823572	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11828786	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs12420360	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs1893756	0.95[EUR][1000 genomes]
rs1893757	0.95[EUR][1000 genomes]
rs2100393	0.86[ASN][1000 genomes]
rs2156862	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2156863	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2276289	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2282576	0.81[JPT][hapmap]
rs2602471	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs2602473	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs2602474	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs2602475	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs2602480	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2602481	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs2602482	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs2602484	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2725829	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs2729756	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs2729758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2729772	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2729775	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2844327	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs2852388	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs2852390	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs2853085	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs2853089	0.82[JPT][hapmap]
rs2853095	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs2853098	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs2888377	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs34375485	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3901607	0.87[AFR][1000 genomes]
rs4944156	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4945161	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs4945164	0.84[AFR][1000 genomes]
rs733358	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs745458	0.82[ASN][1000 genomes]
rs869707	0.83[EUR][1000 genomes]
rs876319	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs948959	0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs9634030	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534515	chr11:76900813-77035769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76965400-76973200	Weak transcription	Liver	Liver
2	chr11:76970400-76970800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:76970400-76971200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:76970400-76971400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:76970400-76971400	Enhancers	Osteobl	bone
6	chr11:76970600-76971000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:76970600-76971000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:76970600-76971400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:76970600-76971400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:76970600-76971400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:76970600-76972800	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links