Variant report

Variant	rs733358
Chromosome Location	chr11:77023510-77023511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYB	chr11:77023346-77023580	K562	blood:	n/a	chr11:77023402-77023416 chr11:77023402-77023417 chr11:77023402-77023415 chr11:77023402-77023417 chr11:77023404-77023414
2	POLR2A	chr11:77023140-77023610	H1-neurons	neurons:	n/a	n/a
3	NFYB	chr11:77023370-77023813	GM12878	blood:	n/a	chr11:77023402-77023416 chr11:77023402-77023417 chr11:77023402-77023415 chr11:77023402-77023417 chr11:77023404-77023414
4	POLR2A	chr11:77023135-77023643	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
ENSG00000224829	TF binding region

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10501425	0.81[AMR][1000 genomes]
rs10899366	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs10899367	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs10899373	0.89[AMR][1000 genomes]
rs11237198	0.81[AMR][1000 genomes]
rs11237200	0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap]
rs11820118	0.94[JPT][hapmap]
rs11828786	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs12223138	0.85[AMR][1000 genomes]
rs12420360	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs12421190	0.81[AMR][1000 genomes]
rs17135689	0.81[AMR][1000 genomes]
rs2100393	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2154754	0.89[JPT][hapmap]
rs2156862	0.83[AMR][1000 genomes]
rs2156863	0.84[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap]
rs2282576	0.87[CHD][hapmap];0.90[MEX][hapmap]
rs2467481	0.85[AMR][1000 genomes]
rs2602471	0.84[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes]
rs2602473	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs2602474	0.84[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes]
rs2602475	0.84[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes]
rs2602480	0.84[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap]
rs2602481	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2602482	0.89[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2602484	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2725829	0.84[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap]
rs2725834	0.81[AMR][1000 genomes]
rs2729749	0.85[AMR][1000 genomes]
rs2729750	0.89[AMR][1000 genomes]
rs2729752	0.85[AMR][1000 genomes]
rs2729756	0.94[JPT][hapmap];0.82[AMR][1000 genomes]
rs2729758	0.84[CHB][hapmap];0.96[CHD][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap]
rs2729763	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2729772	0.89[CHB][hapmap];0.97[CHD][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs2729775	0.92[JPT][hapmap];0.89[AMR][1000 genomes]
rs2844327	0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap]
rs2844335	0.89[AMR][1000 genomes]
rs2852388	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs2852390	0.84[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap]
rs2853084	0.81[AMR][1000 genomes]
rs2853085	0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap]
rs2853089	0.89[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs2853091	0.89[AMR][1000 genomes]
rs2853094	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs2853095	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs2853098	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs2888377	0.84[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes]
rs34375485	0.82[ASN][1000 genomes]
rs3740769	0.87[ASW][hapmap]
rs4944151	0.87[CHD][hapmap];0.90[MEX][hapmap]
rs4944159	0.82[AMR][1000 genomes]
rs57305199	0.81[AMR][1000 genomes]
rs57440754	0.81[AMR][1000 genomes]
rs7105662	0.85[AMR][1000 genomes]
rs7125798	0.87[ASW][hapmap]
rs724369	0.85[AMR][1000 genomes]
rs745458	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs876319	0.84[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs896841	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs947810	0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap]
rs948959	1.00[ASW][hapmap];0.87[CHD][hapmap];0.90[MEX][hapmap]
rs9634030	0.84[CHB][hapmap];0.97[CHD][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534515	chr11:76900813-77035769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77015200-77027600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr11:77020600-77024400	Weak transcription	HSMM	muscle
3	chr11:77020800-77032000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:77020800-77033200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:77021000-77024600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr11:77021000-77032600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:77022400-77032000	Weak transcription	Fetal Intestine Large	intestine
8	chr11:77023200-77024400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:77023400-77024400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:77023400-77024400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:77023400-77024600	Weak transcription	NHDF-Ad	bronchial

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