Variant report

Variant	rs896841
Chromosome Location	chr11:77032307-77032308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1037452	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10501425	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10899366	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs10899367	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs10899372	0.92[ASN][1000 genomes]
rs10899373	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899377	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11237190	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11237198	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11237200	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.86[AMR][1000 genomes]
rs11820118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11828786	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes]
rs12223138	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12420360	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12421190	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1453341	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17135670	0.88[YRI][hapmap];0.89[AMR][1000 genomes]
rs17135689	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2100393	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2154754	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs2156863	0.94[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap]
rs2467481	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2602460	0.82[ASN][1000 genomes]
rs2602461	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2602466	0.80[ASN][1000 genomes]
rs2602471	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2602472	0.82[LWK][hapmap];0.83[YRI][hapmap]
rs2602473	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2602474	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2602475	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2602480	0.94[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap]
rs2602481	0.89[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2602482	0.89[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs2725829	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.84[ASN][1000 genomes]
rs2725834	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2729749	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2729750	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2729751	0.82[ASN][1000 genomes]
rs2729752	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2729756	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2729757	0.86[ASN][1000 genomes]
rs2729758	0.94[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap]
rs2729763	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2729772	0.89[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap]
rs2729775	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2844327	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2844335	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2852381	0.81[ASN][1000 genomes]
rs2852383	0.82[ASN][1000 genomes]
rs2852388	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2852389	1.00[EUR][1000 genomes]
rs2852390	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap]
rs2853084	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2853085	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes]
rs2853089	1.00[CEU][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes]
rs2853091	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2853094	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs2853095	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes]
rs2853098	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs2888377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4944156	0.80[ASN][1000 genomes]
rs4944159	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4944160	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4945161	0.82[JPT][hapmap]
rs503406	0.82[JPT][hapmap]
rs57305199	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57440754	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592721	1.00[EUR][1000 genomes]
rs7105662	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs724369	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs733358	0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs745458	0.88[ASN][1000 genomes]
rs876319	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs947809	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs947810	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs9634030	0.94[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534515	chr11:76900813-77035769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77020800-77033200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:77021000-77032600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:77025000-77033000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:77025000-77033000	Weak transcription	HSMMtube	muscle
5	chr11:77025000-77033000	Weak transcription	NHLF	lung
6	chr11:77025000-77033200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:77025000-77033200	Weak transcription	NHDF-Ad	bronchial
8	chr11:77025000-77033400	Weak transcription	NH-A	brain
9	chr11:77025000-77034200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:77025400-77033400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:77025400-77037600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:77027400-77043000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:77027600-77033200	Weak transcription	Fetal Stomach	stomach
14	chr11:77027600-77043000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:77027800-77033400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:77028000-77033000	Weak transcription	Fetal Intestine Small	intestine
17	chr11:77028000-77068400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr11:77028200-77033400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:77028200-77033400	Weak transcription	Liver	Liver
20	chr11:77028200-77066000	Weak transcription	Fetal Kidney	kidney
21	chr11:77028400-77043000	Weak transcription	Fetal Lung	lung
22	chr11:77029200-77033200	Weak transcription	Ovary	ovary
23	chr11:77029400-77032600	Weak transcription	Placenta	Placenta
24	chr11:77030200-77033400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr11:77030400-77032400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr11:77030400-77033000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:77030400-77033200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr11:77030400-77033400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr11:77030400-77033400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr11:77030400-77043000	Weak transcription	Colon Smooth Muscle	Colon
31	chr11:77030600-77032800	Weak transcription	Adipose Nuclei	Adipose
32	chr11:77030600-77032800	Weak transcription	Aorta	Aorta
33	chr11:77030600-77033000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:77030600-77086800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:77030800-77032400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr11:77030800-77033000	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr11:77030800-77033000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr11:77030800-77033000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:77030800-77033200	Weak transcription	Brain Germinal Matrix	brain
40	chr11:77030800-77033200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr11:77030800-77033200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr11:77030800-77033600	Weak transcription	Thymus	Thymus
43	chr11:77030800-77036800	Weak transcription	Rectal Smooth Muscle	rectum
44	chr11:77030800-77046800	Weak transcription	Small Intestine	intestine
45	chr11:77030800-77054200	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr11:77031000-77033000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr11:77031000-77033200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr11:77031000-77033200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr11:77031200-77033000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:77031200-77033200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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