Variant report

Variant	rs7105662
Chromosome Location	chr11:77104776-77104777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1037452	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10501425	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10899372	0.89[ASN][1000 genomes]
rs10899373	0.96[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10899377	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11237190	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11237198	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11237200	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11820118	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11828786	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12223138	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12420360	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12421190	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1453341	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17135670	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17135689	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2100393	0.89[AMR][1000 genomes]
rs2467481	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2602460	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2602461	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2602462	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2602471	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2602472	0.85[AFR][1000 genomes]
rs2602473	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2602474	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2602475	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2602481	0.89[AMR][1000 genomes]
rs2725829	0.96[ASN][1000 genomes]
rs2725834	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2729749	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2729750	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2729751	1.00[ASN][1000 genomes]
rs2729752	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2729756	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2729757	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2729763	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2729775	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2844327	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2844335	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2852381	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2852383	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2852388	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2852389	0.92[ASN][1000 genomes]
rs2852390	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2853084	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2853085	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2853089	0.81[AMR][1000 genomes]
rs2853091	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2853095	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2853098	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2888377	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4092275	0.86[ASN][1000 genomes]
rs476258	0.81[ASN][1000 genomes]
rs4944159	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4944160	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs57305199	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs57440754	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6592721	0.92[ASN][1000 genomes]
rs7112264	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs724369	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs733358	0.85[AMR][1000 genomes]
rs745458	0.81[AMR][1000 genomes]
rs7944289	0.92[ASN][1000 genomes]
rs876319	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs896841	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs947809	0.87[ASN][1000 genomes]
rs947810	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1037724	chr11:77061945-77250391	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv541091	chr11:77061945-77250391	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3437433	chr11:77101280-77291686	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77046800-77121600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:77055200-77117600	Weak transcription	Pancreas	Pancrea
3	chr11:77067200-77111800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:77084000-77111400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:77084200-77107000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:77084600-77121200	Weak transcription	Thymus	Thymus
7	chr11:77086400-77108000	Weak transcription	Brain Anterior Caudate	brain
8	chr11:77086600-77120000	Weak transcription	Spleen	Spleen
9	chr11:77087200-77106800	Weak transcription	NHEK	skin
10	chr11:77090800-77106400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:77090800-77111200	Weak transcription	HMEC	breast
12	chr11:77091000-77106800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:77091000-77108200	Weak transcription	Brain Angular Gyrus	brain
14	chr11:77091000-77112000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:77091000-77113400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:77091000-77117000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr11:77091000-77117600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:77091800-77106800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr11:77092000-77106800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:77093600-77117800	Weak transcription	NH-A	brain
21	chr11:77094000-77118400	Weak transcription	NHLF	lung
22	chr11:77094200-77111800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr11:77094200-77118200	Weak transcription	NHDF-Ad	bronchial
24	chr11:77094200-77118400	Weak transcription	Colonic Mucosa	Colon
25	chr11:77095400-77105600	Weak transcription	Dnd41	blood
26	chr11:77095400-77106800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:77095400-77121000	Weak transcription	Fetal Thymus	thymus
28	chr11:77095800-77118600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:77097800-77105400	Weak transcription	Fetal Brain Female	brain
30	chr11:77097800-77111200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr11:77097800-77111200	Weak transcription	Fetal Muscle Leg	muscle
32	chr11:77098000-77121200	Weak transcription	Placenta	Placenta
33	chr11:77098200-77118400	Weak transcription	Fetal Stomach	stomach
34	chr11:77101400-77104800	Strong transcription	GM12878-XiMat	blood
35	chr11:77102400-77106600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:77102600-77112400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr11:77102800-77106800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr11:77102800-77106800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:77102800-77111800	Weak transcription	Fetal Lung	lung
40	chr11:77102800-77116400	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr11:77103000-77106000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:77103000-77106600	Weak transcription	Fetal Intestine Large	intestine
43	chr11:77103000-77107000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:77103000-77118400	Weak transcription	Primary hematopoietic stem cells	blood
45	chr11:77103000-77121400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr11:77103200-77106600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr11:77103200-77106800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:77103200-77108600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr11:77103200-77112800	Weak transcription	Primary B cells from cord blood	blood
50	chr11:77103400-77104800	Enhancers	Duodenum Mucosa	Duodenum

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