Variant report

Variant	rs11237190
Chromosome Location	chr11:77163263-77163264
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1037452	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10501425	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899366	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs10899367	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs10899372	0.88[ASN][1000 genomes]
rs10899373	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10899377	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11237198	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11237200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11820118	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11828786	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12223138	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12420360	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12421190	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1453341	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135670	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17135689	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2100393	0.82[AMR][1000 genomes]
rs2154754	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs2156863	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs2467481	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2602460	0.87[ASN][1000 genomes]
rs2602461	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2602462	0.89[ASN][1000 genomes]
rs2602466	0.80[ASN][1000 genomes]
rs2602471	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2602472	0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs2602473	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2602474	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2602475	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2602480	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs2602481	0.87[CHB][hapmap];0.92[JPT][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes]
rs2602482	0.87[CHB][hapmap];0.93[JPT][hapmap]
rs2725829	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2725834	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2729749	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2729750	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2729751	0.87[ASN][1000 genomes]
rs2729752	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2729756	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2729757	0.94[ASN][1000 genomes]
rs2729758	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs2729763	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2729772	0.87[CHB][hapmap];0.92[JPT][hapmap]
rs2729775	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2844327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2844335	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2852381	0.88[ASN][1000 genomes]
rs2852383	0.87[ASN][1000 genomes]
rs2852388	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2852389	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2852390	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2853084	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2853085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2853089	1.00[CEU][hapmap];0.80[CHB][hapmap];0.81[AMR][1000 genomes]
rs2853091	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2853094	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs2853095	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2853098	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2888377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3019249	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4092275	0.99[ASN][1000 genomes]
rs4944159	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4944160	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs503406	0.80[JPT][hapmap]
rs531638	0.81[ASN][1000 genomes]
rs57305199	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57440754	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs595654	0.81[ASN][1000 genomes]
rs6592721	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7105662	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7112264	0.94[ASN][1000 genomes]
rs7120719	0.81[AMR][1000 genomes]
rs724369	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs733358	0.93[JPT][hapmap]
rs7944289	0.93[ASN][1000 genomes]
rs876319	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs896841	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs947809	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9634030	0.93[CHB][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1037724	chr11:77061945-77250391	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv541091	chr11:77061945-77250391	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3437433	chr11:77101280-77291686	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77142200-77164800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:77149200-77165400	Weak transcription	Ovary	ovary
3	chr11:77152800-77166400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:77153600-77168600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:77155400-77181400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:77157000-77168400	Weak transcription	Small Intestine	intestine
7	chr11:77158200-77168600	Weak transcription	Stomach Mucosa	stomach
8	chr11:77158400-77169800	Weak transcription	Fetal Intestine Large	intestine
9	chr11:77158600-77164000	Weak transcription	Fetal Intestine Small	intestine
10	chr11:77159800-77168400	Weak transcription	Fetal Brain Female	brain
11	chr11:77160200-77169400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:77160600-77164800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:77160600-77165800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:77160600-77178000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:77160800-77167000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:77161000-77170200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:77161200-77163400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:77161200-77167400	Weak transcription	Brain Hippocampus Middle	brain
19	chr11:77161200-77179200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:77162000-77163600	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr11:77162000-77165400	Weak transcription	Primary T cells from cord blood	blood
22	chr11:77162000-77165800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:77162200-77163800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:77162400-77164000	Enhancers	GM12878-XiMat	blood
25	chr11:77162400-77165000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr11:77162400-77166800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr11:77162400-77167000	Weak transcription	Primary B cells from cord blood	blood
28	chr11:77162400-77167200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr11:77162400-77167400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:77162400-77168000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr11:77162600-77165000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr11:77162600-77165600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr11:77162600-77165600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:77162600-77165800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr11:77162600-77166200	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr11:77162600-77166400	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr11:77162800-77163400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:77163000-77163600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:77163000-77164200	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr11:77163000-77173400	Weak transcription	Placenta	Placenta
41	chr11:77163200-77163600	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr11:77163200-77163800	Genic enhancers	HUES64 Cell Line	embryonic stem cell
43	chr11:77163200-77163800	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr11:77163200-77164000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links