Variant report

Variant	rs531638
Chromosome Location	chr11:77147247-77147248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10899366	0.83[JPT][hapmap]
rs10899367	0.82[JPT][hapmap]
rs11237190	0.81[ASN][1000 genomes]
rs11237200	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs11820118	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs11828786	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs1225478	0.85[EUR][1000 genomes]
rs1237490	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12420360	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs2154754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2156863	0.83[JPT][hapmap]
rs2602471	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs2602473	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs2602474	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs2602475	0.94[JPT][hapmap]
rs2602476	0.90[EUR][1000 genomes]
rs2602480	0.83[JPT][hapmap]
rs2602481	0.94[JPT][hapmap]
rs2602482	0.94[JPT][hapmap]
rs2602487	0.81[EUR][1000 genomes]
rs2725829	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs2729756	0.94[JPT][hapmap]
rs2729758	0.83[JPT][hapmap]
rs2729772	0.83[JPT][hapmap]
rs2729775	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs2844327	0.80[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs2852388	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs2852390	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs2853085	0.80[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs2853094	0.83[JPT][hapmap]
rs2853095	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs2853098	0.80[CHB][hapmap];0.88[JPT][hapmap]
rs2888377	0.94[JPT][hapmap]
rs3015982	0.90[EUR][1000 genomes]
rs3015983	0.88[EUR][1000 genomes]
rs3015985	0.88[EUR][1000 genomes]
rs3015986	0.87[EUR][1000 genomes]
rs3015988	0.87[EUR][1000 genomes]
rs3015990	0.87[EUR][1000 genomes]
rs3015992	0.83[EUR][1000 genomes]
rs3019233	0.89[EUR][1000 genomes]
rs3019234	0.89[EUR][1000 genomes]
rs3019235	0.88[EUR][1000 genomes]
rs3019236	0.89[EUR][1000 genomes]
rs3019249	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3019257	0.88[EUR][1000 genomes]
rs34025917	0.83[EUR][1000 genomes]
rs34880271	0.86[EUR][1000 genomes]
rs4092275	0.81[ASN][1000 genomes]
rs472691	0.87[EUR][1000 genomes]
rs476258	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs479104	0.90[EUR][1000 genomes]
rs493256	0.86[EUR][1000 genomes]
rs494289	0.83[EUR][1000 genomes]
rs4944160	0.81[ASN][1000 genomes]
rs503406	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs505841	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs508662	0.87[EUR][1000 genomes]
rs51500	0.86[EUR][1000 genomes]
rs522015	0.88[EUR][1000 genomes]
rs523481	0.87[EUR][1000 genomes]
rs535008	0.88[EUR][1000 genomes]
rs552323	0.87[EUR][1000 genomes]
rs557484	0.86[EUR][1000 genomes]
rs558470	0.87[EUR][1000 genomes]
rs560571	0.90[EUR][1000 genomes]
rs561386	0.87[EUR][1000 genomes]
rs562845	0.88[EUR][1000 genomes]
rs563731	0.88[EUR][1000 genomes]
rs572485	0.87[EUR][1000 genomes]
rs57305199	0.81[ASN][1000 genomes]
rs576220	0.85[EUR][1000 genomes]
rs580624	0.87[EUR][1000 genomes]
rs592602	0.83[EUR][1000 genomes]
rs595654	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs598801	0.86[EUR][1000 genomes]
rs644551	0.87[EUR][1000 genomes]
rs649040	0.87[EUR][1000 genomes]
rs653792	0.86[EUR][1000 genomes]
rs674259	0.87[EUR][1000 genomes]
rs683455	0.89[EUR][1000 genomes]
rs683762	0.87[EUR][1000 genomes]
rs684793	0.89[EUR][1000 genomes]
rs686068	0.86[EUR][1000 genomes]
rs689108	0.90[EUR][1000 genomes]
rs733358	0.88[JPT][hapmap]
rs7934230	0.87[EUR][1000 genomes]
rs7949721	0.85[EUR][1000 genomes]
rs876319	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs947809	0.81[ASN][1000 genomes]
rs947810	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs9634030	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1037724	chr11:77061945-77250391	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv541091	chr11:77061945-77250391	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3437433	chr11:77101280-77291686	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77135400-77149000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:77141600-77148600	Weak transcription	Ovary	ovary
3	chr11:77142200-77164800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:77142400-77151600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:77142800-77156200	Weak transcription	Gastric	stomach
6	chr11:77145600-77148000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr11:77146800-77147400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr11:77146800-77148000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:77146800-77148000	Flanking Active TSS	GM12878-XiMat	blood
10	chr11:77147000-77147400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:77147000-77147600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
12	chr11:77147000-77147600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr11:77147000-77147800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:77147000-77148000	Flanking Active TSS	Duodenum Mucosa	Duodenum
15	chr11:77147000-77148000	Enhancers	Fetal Lung	lung
16	chr11:77147000-77148200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr11:77147000-77148200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr11:77147000-77148200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:77147000-77148800	Enhancers	Fetal Intestine Large	intestine
20	chr11:77147000-77149000	Enhancers	Fetal Intestine Small	intestine
21	chr11:77147000-77149200	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr11:77147000-77149200	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr11:77147000-77150400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:77147200-77147400	Enhancers	H1 Cell Line	embryonic stem cell
25	chr11:77147200-77147400	Flanking Active TSS	Primary hematopoietic stem cells	blood
26	chr11:77147200-77147800	Weak transcription	Thymus	Thymus
27	chr11:77147200-77149000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr11:77147200-77149200	Enhancers	Pancreas	Pancrea
29	chr11:77147200-77149200	Enhancers	Small Intestine	intestine
30	chr11:77147200-77160200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr11:77147200-77160800	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links