Variant report

Variant	rs34880271
Chromosome Location	chr11:77045154-77045155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs11237141	0.91[ASN][1000 genomes]
rs11237142	0.91[ASN][1000 genomes]
rs11237148	0.91[ASN][1000 genomes]
rs11237150	0.91[ASN][1000 genomes]
rs11237151	0.91[ASN][1000 genomes]
rs11237164	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1125619	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11512967	0.83[ASN][1000 genomes]
rs1225478	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361757	0.91[ASN][1000 genomes]
rs12363707	0.91[ASN][1000 genomes]
rs12363842	0.91[ASN][1000 genomes]
rs12366261	0.88[ASN][1000 genomes]
rs1237490	0.90[EUR][1000 genomes]
rs12794253	0.91[ASN][1000 genomes]
rs1377472	0.91[ASN][1000 genomes]
rs1597954	0.84[ASN][1000 genomes]
rs1622364	0.91[ASN][1000 genomes]
rs1670446	0.91[ASN][1000 genomes]
rs1670449	0.91[ASN][1000 genomes]
rs1670450	0.91[ASN][1000 genomes]
rs1670456	0.91[ASN][1000 genomes]
rs1670458	0.91[ASN][1000 genomes]
rs1670461	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1670462	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17824184	0.91[ASN][1000 genomes]
rs1793468	0.91[ASN][1000 genomes]
rs1793471	0.88[ASN][1000 genomes]
rs1793472	0.91[ASN][1000 genomes]
rs1793487	0.91[ASN][1000 genomes]
rs1793490	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2156567	0.91[ASN][1000 genomes]
rs2602476	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2602483	0.91[ASN][1000 genomes]
rs2602487	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2725820	0.96[ASN][1000 genomes]
rs2725822	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2725825	0.91[ASN][1000 genomes]
rs2725828	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3015982	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3015983	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3015985	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3015986	0.89[EUR][1000 genomes]
rs3015988	0.89[EUR][1000 genomes]
rs3015990	0.89[EUR][1000 genomes]
rs3015992	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3019233	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3019234	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3019235	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3019236	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3019249	0.83[EUR][1000 genomes]
rs3019257	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34025917	0.85[EUR][1000 genomes]
rs4375461	0.91[ASN][1000 genomes]
rs472691	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs476258	0.88[EUR][1000 genomes]
rs479104	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs493256	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs494289	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs503406	0.92[EUR][1000 genomes]
rs505841	0.87[EUR][1000 genomes]
rs508662	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs51500	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs520938	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs522015	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523481	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs531638	0.86[EUR][1000 genomes]
rs535008	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs552323	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs557484	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs558470	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs560571	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs561386	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs562845	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs563731	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs572485	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs576220	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs580624	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs592602	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs595654	0.86[EUR][1000 genomes]
rs598801	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs644551	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs649040	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs653792	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs657269	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs66518011	0.88[ASN][1000 genomes]
rs66540426	0.91[ASN][1000 genomes]
rs66728428	0.91[ASN][1000 genomes]
rs674259	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs683455	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs683762	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs684793	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs686068	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689108	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7934230	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7949721	0.88[EUR][1000 genomes]
rs883680	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77028000-77068400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:77028200-77066000	Weak transcription	Fetal Kidney	kidney
3	chr11:77030600-77086800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:77030800-77046800	Weak transcription	Small Intestine	intestine
5	chr11:77030800-77054200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:77031600-77046600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr11:77031600-77066400	Weak transcription	Gastric	stomach
8	chr11:77031600-77073800	Weak transcription	Spleen	Spleen
9	chr11:77031800-77070400	Weak transcription	Fetal Brain Male	brain
10	chr11:77032200-77066400	Weak transcription	Lung	lung
11	chr11:77032600-77046200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:77033400-77067200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr11:77033400-77090400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr11:77033600-77046800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:77033800-77045200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr11:77033800-77059200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr11:77034400-77047000	Weak transcription	Left Ventricle	heart
18	chr11:77034400-77054600	Weak transcription	Pancreas	Pancrea
19	chr11:77034400-77059200	Weak transcription	Psoas Muscle	Psoas
20	chr11:77034400-77086200	Weak transcription	NHLF	lung
21	chr11:77034600-77045400	Weak transcription	Osteobl	bone
22	chr11:77034600-77046800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:77034600-77047000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:77034600-77051600	Weak transcription	Brain Anterior Caudate	brain
25	chr11:77034800-77047200	Weak transcription	Brain Angular Gyrus	brain
26	chr11:77034800-77063800	Weak transcription	Brain Substantia Nigra	brain
27	chr11:77034800-77064000	Weak transcription	Brain Hippocampus Middle	brain
28	chr11:77035000-77046600	Weak transcription	A549	lung
29	chr11:77036200-77046800	Weak transcription	HMEC	breast
30	chr11:77037600-77045400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:77037600-77045800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:77037600-77051600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr11:77037800-77045400	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr11:77037800-77046400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr11:77041800-77056600	Weak transcription	HSMMtube	muscle
36	chr11:77042600-77047800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:77042600-77048600	Strong transcription	Fetal Muscle Leg	muscle
38	chr11:77042600-77049200	Strong transcription	Duodenum Mucosa	Duodenum
39	chr11:77042600-77053600	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr11:77042800-77045800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
41	chr11:77042800-77048600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:77042800-77080800	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr11:77043000-77045600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr11:77043000-77048000	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr11:77043000-77048600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr11:77043000-77048600	Strong transcription	Fetal Intestine Large	intestine
47	chr11:77043000-77048600	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr11:77043000-77048800	Strong transcription	Primary T cells from cord blood	blood
49	chr11:77043000-77048800	Strong transcription	Stomach Smooth Muscle	stomach
50	chr11:77043000-77049200	Strong transcription	Placenta	Placenta

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