Variant report

Variant	rs1793468
Chromosome Location	chr11:76993833-76993834
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76987750..76989458-chr11:76993582..76995503,2	MCF-7	breast:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs11237141	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11237142	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11237148	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11237150	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11237151	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11237160	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11237162	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11237164	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1125619	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11512967	0.83[ASN][1000 genomes]
rs1225478	0.91[ASN][1000 genomes]
rs12361757	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363707	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363842	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12366261	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12794253	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1377472	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1597954	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1622364	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1670445	0.82[EUR][1000 genomes]
rs1670446	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1670449	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1670450	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1670455	0.84[EUR][1000 genomes]
rs1670456	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1670458	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1670461	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1670462	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17824184	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793471	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1793472	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793487	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793490	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2156567	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2602476	0.87[ASN][1000 genomes]
rs2602483	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2602487	0.96[ASN][1000 genomes]
rs2725820	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2725822	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2725825	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2725828	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34880271	0.91[ASN][1000 genomes]
rs4375461	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs472691	0.96[ASN][1000 genomes]
rs479104	0.87[ASN][1000 genomes]
rs493256	0.91[ASN][1000 genomes]
rs494289	0.91[ASN][1000 genomes]
rs508662	0.96[ASN][1000 genomes]
rs51500	0.91[ASN][1000 genomes]
rs522015	0.91[ASN][1000 genomes]
rs523481	0.96[ASN][1000 genomes]
rs535008	0.87[ASN][1000 genomes]
rs552323	0.91[ASN][1000 genomes]
rs557484	0.87[ASN][1000 genomes]
rs558470	0.96[ASN][1000 genomes]
rs560571	0.87[ASN][1000 genomes]
rs561386	0.96[ASN][1000 genomes]
rs562845	0.96[ASN][1000 genomes]
rs563731	0.87[ASN][1000 genomes]
rs572485	0.96[ASN][1000 genomes]
rs576220	0.96[ASN][1000 genomes]
rs580624	0.91[ASN][1000 genomes]
rs592602	0.96[ASN][1000 genomes]
rs598801	0.91[ASN][1000 genomes]
rs644551	0.96[ASN][1000 genomes]
rs649040	0.96[ASN][1000 genomes]
rs653792	0.91[ASN][1000 genomes]
rs66518011	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66540426	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66728428	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs674259	0.91[ASN][1000 genomes]
rs683455	0.87[ASN][1000 genomes]
rs683762	0.91[ASN][1000 genomes]
rs684793	0.87[ASN][1000 genomes]
rs686068	0.91[ASN][1000 genomes]
rs689108	0.87[ASN][1000 genomes]
rs73499558	0.80[AFR][1000 genomes]
rs883680	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534515	chr11:76900813-77035769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76990200-76995000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:76990200-76998000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:76990600-76994000	Weak transcription	Liver	Liver
4	chr11:76990600-76994600	Weak transcription	Osteobl	bone
5	chr11:76990600-76995000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:76990600-76995600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:76990600-76998000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:76990600-76998200	Weak transcription	HSMM	muscle
9	chr11:76993800-76994000	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links