Variant report

Variant	rs11237160
Chromosome Location	chr11:76989089-76989090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76987750..76989458-chr11:76993582..76995503,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11237141	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11237142	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11237148	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11237150	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11237151	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11237162	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11237164	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1125619	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12361757	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12363707	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12363842	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12366261	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12794253	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1377472	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1597954	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1622364	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1670445	0.82[EUR][1000 genomes]
rs1670446	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1670449	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1670450	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1670455	0.84[EUR][1000 genomes]
rs1670456	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1670458	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1670461	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1670462	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17824184	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1793468	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1793471	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1793472	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1793487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1793490	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2156567	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2602483	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2725820	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2725822	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2725825	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2725828	0.88[EUR][1000 genomes]
rs3015986	0.86[AFR][1000 genomes]
rs3015988	0.86[AFR][1000 genomes]
rs3015990	0.86[AFR][1000 genomes]
rs4375461	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs494289	0.80[AMR][1000 genomes]
rs522015	0.80[AMR][1000 genomes]
rs592602	0.80[AMR][1000 genomes]
rs598801	0.80[AMR][1000 genomes]
rs66518011	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66540426	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66728428	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs686068	0.80[AMR][1000 genomes]
rs7949721	0.86[AFR][1000 genomes]
rs883680	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534515	chr11:76900813-77035769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76974200-76989200	Weak transcription	Liver	Liver

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