Variant report

Variant	rs1670455
Chromosome Location	chr11:77011269-77011270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77009625..77011504-chr11:77016823..77019690,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10899366	0.89[JPT][hapmap]
rs10899367	0.88[JPT][hapmap]
rs11237160	0.84[EUR][1000 genomes]
rs11237162	0.84[EUR][1000 genomes]
rs11237164	0.82[EUR][1000 genomes]
rs1125619	0.82[EUR][1000 genomes]
rs1377472	0.88[EUR][1000 genomes]
rs1597954	0.84[EUR][1000 genomes]
rs1622364	0.84[EUR][1000 genomes]
rs1670445	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1670446	0.88[EUR][1000 genomes]
rs1670450	0.84[EUR][1000 genomes]
rs1670456	0.88[EUR][1000 genomes]
rs1670458	0.84[EUR][1000 genomes]
rs1670461	0.82[EUR][1000 genomes]
rs1670462	0.82[EUR][1000 genomes]
rs1793468	0.84[EUR][1000 genomes]
rs1793471	0.87[EUR][1000 genomes]
rs1793472	0.88[EUR][1000 genomes]
rs1793487	0.83[EUR][1000 genomes]
rs1793490	0.82[EUR][1000 genomes]
rs2154754	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs2156567	0.83[EUR][1000 genomes]
rs2156863	0.88[JPT][hapmap]
rs2602480	0.88[JPT][hapmap]
rs2602481	0.82[JPT][hapmap]
rs2602482	0.82[JPT][hapmap]
rs2602483	0.83[EUR][1000 genomes]
rs2602484	0.81[ASN][1000 genomes]
rs2725822	0.84[EUR][1000 genomes]
rs2725825	0.83[EUR][1000 genomes]
rs2725828	0.82[EUR][1000 genomes]
rs2729758	0.88[JPT][hapmap]
rs2729772	0.88[JPT][hapmap]
rs2853094	0.89[JPT][hapmap]
rs4945161	0.85[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9634030	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534515	chr11:76900813-77035769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77004400-77012600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:77010200-77011400	Enhancers	K562	blood
3	chr11:77010200-77012400	Enhancers	HepG2	liver
4	chr11:77010200-77012600	Enhancers	Stomach Mucosa	stomach
5	chr11:77011000-77012600	Enhancers	A549	lung

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