Variant report

Variant	rs28532075
Chromosome Location	chr15:58799324-58799325
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58797035..58800948-chr15:58803702..58808140,4	K562	blood:
2	chr15:58797460..58800451-chr15:58803881..58805523,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16940391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28711852	1.00[AMR][1000 genomes]
rs73424665	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv904268	chr15:58763678-58803225	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58791400-58809400	Weak transcription	Spleen	Spleen
2	chr15:58793400-58803400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:58795800-58799400	Enhancers	Fetal Thymus	thymus
4	chr15:58796400-58799400	Enhancers	Fetal Muscle Leg	muscle
5	chr15:58796400-58799600	Enhancers	Primary T cells from cord blood	blood
6	chr15:58797400-58799600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:58797400-58799800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:58797400-58800000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:58797400-58800000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr15:58797600-58799400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:58797600-58799600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:58797600-58799800	Enhancers	HMEC	breast
13	chr15:58797800-58799400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
14	chr15:58798200-58799800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:58798400-58799800	Weak transcription	K562	blood
16	chr15:58798600-58799400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr15:58798600-58799600	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr15:58798600-58799800	Enhancers	NHEK	skin
19	chr15:58798600-58807800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr15:58798600-58813200	Weak transcription	Aorta	Aorta
21	chr15:58798800-58802200	Weak transcription	NHDF-Ad	bronchial
22	chr15:58798800-58802800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr15:58798800-58802800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr15:58798800-58807800	Weak transcription	Primary B cells from cord blood	blood
25	chr15:58798800-58812600	Weak transcription	Left Ventricle	heart
26	chr15:58799000-58800400	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr15:58799000-58801000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:58799000-58801800	Weak transcription	HSMM	muscle
29	chr15:58799000-58802400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr15:58799000-58804600	Weak transcription	Placenta	Placenta
31	chr15:58799000-58805000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr15:58799000-58806000	Weak transcription	Psoas Muscle	Psoas
33	chr15:58799200-58801000	Weak transcription	HSMMtube	muscle
34	chr15:58799200-58801400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr15:58799200-58802800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr15:58799200-58803400	Weak transcription	Esophagus	oesophagus
37	chr15:58799200-58807200	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr15:58799200-58809400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links