Variant report

Variant	rs28532224
Chromosome Location	chr7:99280884-99280885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10247580	1.00[ASW][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.86[YRI][hapmap]
rs10252115	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259288	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10264022	1.00[AMR][1000 genomes]
rs10266141	0.87[LWK][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs13437714	0.87[LWK][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs2030537	1.00[MEX][hapmap]
rs28508567	1.00[AMR][1000 genomes]
rs28683039	1.00[ASW][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.86[YRI][hapmap]
rs41300716	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41301676	0.83[AMR][1000 genomes]
rs45559433	0.83[AMR][1000 genomes]
rs58443342	0.83[AMR][1000 genomes]
rs73408523	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv970911	chr7:99275492-99333590	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99273800-99290400	Weak transcription	Primary T cells from cord blood	blood
2	chr7:99277000-99295800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:99277200-99281200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:99277200-99282800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:99277800-99282400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:99278000-99290800	Weak transcription	Pancreas	Pancrea
7	chr7:99278200-99283000	Weak transcription	HepG2	liver
8	chr7:99278400-99282600	Weak transcription	Liver	Liver
9	chr7:99278400-99289000	Weak transcription	Psoas Muscle	Psoas
10	chr7:99278600-99282800	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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