Variant report

Variant	rs45559433
Chromosome Location	chr7:99328546-99328547
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99327130..99328855-chr7:99331843..99334078,2	K562	blood:
2	chr7:99327792..99330076-chr7:99335753..99337453,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CYP3A7-1	chr7:99328196-99328775	NONHSAT122271

Variant related genes	Relation type
ENSG00000160870	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10252115	0.83[AMR][1000 genomes]
rs10259288	0.83[AMR][1000 genomes]
rs10264022	0.83[AMR][1000 genomes]
rs10266141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13437714	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28508567	0.83[AMR][1000 genomes]
rs28532224	0.83[AMR][1000 genomes]
rs41300716	0.83[AMR][1000 genomes]
rs73408523	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv970911	chr7:99275492-99333590	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv888771	chr7:99294762-99355278	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv3378448	chr7:99295540-99331065	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99303200-99337200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr7:99306000-99339000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:99306800-99340800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:99307200-99334400	Weak transcription	Left Ventricle	heart
5	chr7:99311800-99349000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr7:99314800-99334400	Weak transcription	Esophagus	oesophagus
7	chr7:99315600-99331200	Weak transcription	Aorta	Aorta
8	chr7:99318000-99334600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:99320000-99337200	Weak transcription	Brain Angular Gyrus	brain
10	chr7:99321800-99338200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:99324400-99339200	Weak transcription	Brain Substantia Nigra	brain
12	chr7:99325200-99329000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:99325800-99328800	Enhancers	Fetal Intestine Large	intestine
14	chr7:99325800-99329000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr7:99325800-99329000	Enhancers	Placenta Amnion	Placenta Amnion
16	chr7:99325800-99329200	Enhancers	Fetal Intestine Small	intestine
17	chr7:99325800-99329400	Enhancers	HepG2	liver
18	chr7:99326000-99328600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:99326000-99328600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:99326000-99328800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:99326000-99329200	Enhancers	Placenta	Placenta
22	chr7:99326000-99329600	Enhancers	HMEC	breast
23	chr7:99326200-99328600	Enhancers	NHEK	skin
24	chr7:99326200-99334800	Weak transcription	Spleen	Spleen
25	chr7:99326600-99328600	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr7:99327200-99329000	Enhancers	K562	blood
27	chr7:99327200-99339200	Weak transcription	Brain Anterior Caudate	brain
28	chr7:99327400-99328600	Enhancers	Fetal Thymus	thymus
29	chr7:99327400-99329000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr7:99327600-99330600	Weak transcription	Pancreas	Pancrea
31	chr7:99327800-99332800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:99328000-99330600	Weak transcription	Liver	Liver

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