Variant report

Variant	rs28533385
Chromosome Location	chr15:59062081-59062082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:59061870..59064465-chr15:59224425..59227494,5	K562	blood:
2	chr15:59061712..59064488-chr15:59178344..59181230,2	K562	blood:
3	chr15:59051351..59055079-chr15:59061641..59063693,4	K562	blood:
4	chr15:59052627..59055079-chr15:59061662..59063562,2	K562	blood:
5	chr15:59046301..59048650-chr15:59061431..59063279,4	K562	blood:
6	chr15:59040077..59045685-chr15:59061303..59067063,14	K562	blood:
7	chr15:59046301..59048650-chr15:59061431..59063261,2	K562	blood:
8	chr15:58534212..58537129-chr15:59060905..59062769,2	K562	blood:
9	chr15:59061037..59064884-chr15:59224205..59227723,8	K562	blood:
10	chr15:59040618..59043171-chr15:59061931..59064461,2	MCF-7	breast:
11	chr15:59038832..59043387-chr15:59060936..59065101,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137776	Chromatin interaction
ENSG00000137845	Chromatin interaction
ENSG00000200318	Chromatin interaction
ENSG00000259173	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12437928	0.84[AMR][1000 genomes]
rs12594276	0.84[AMR][1000 genomes]
rs12900320	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12901817	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12914164	0.84[AMR][1000 genomes]
rs1678977	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2620360	0.84[AMR][1000 genomes]
rs28549775	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28812884	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34362744	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs347112	0.85[AMR][1000 genomes]
rs34880782	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4775095	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs481309	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs500057	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs501165	0.88[AMR][1000 genomes]
rs510759	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs556256	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs561903	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs574683	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs596094	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs597112	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs601795	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs624536	0.84[AMR][1000 genomes]
rs625312	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs652193	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs654857	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs654870	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs664936	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs684505	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs688343	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8032298	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	esv1843037	chr15:59005922-59115159	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	esv1798487	chr15:59027139-59213678	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	nsv428638	chr15:59032300-59126567	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59042600-59062600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:59043000-59062400	Weak transcription	Psoas Muscle	Psoas
3	chr15:59057000-59062600	Weak transcription	Dnd41	blood
4	chr15:59058800-59062600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr15:59059000-59062400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr15:59060200-59062400	Weak transcription	Right Atrium	heart
7	chr15:59060800-59062200	Weak transcription	Placenta	Placenta
8	chr15:59061400-59062400	Enhancers	Fetal Brain Male	brain
9	chr15:59061400-59062600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr15:59061400-59062600	Weak transcription	Fetal Thymus	thymus
11	chr15:59061600-59062400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:59062000-59062200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:59062000-59062200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:59062000-59062200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:59062000-59062200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:59062000-59062200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:59062000-59062200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:59062000-59062200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr15:59062000-59062200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:59062000-59062200	Enhancers	Liver	Liver
21	chr15:59062000-59062200	Enhancers	Fetal Kidney	kidney
22	chr15:59062000-59062200	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr15:59062000-59062200	Enhancers	Rectal Smooth Muscle	rectum
24	chr15:59062000-59062200	Enhancers	Stomach Smooth Muscle	stomach
25	chr15:59062000-59062200	Enhancers	NH-A	brain
26	chr15:59062000-59062200	Enhancers	NHDF-Ad	bronchial

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