Variant report

Variant	rs34880782
Chromosome Location	chr15:59085522-59085523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12437928	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12438114	0.84[EUR][1000 genomes]
rs12594276	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12900320	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12901817	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12914164	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1678977	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2620360	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28470867	0.81[ASN][1000 genomes]
rs28533385	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28549775	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28793354	0.81[ASN][1000 genomes]
rs28800895	0.81[ASN][1000 genomes]
rs28812884	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34362744	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs347112	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4775095	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs481309	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs500057	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs501165	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs510759	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs556256	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs561903	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs574683	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs596094	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs597112	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs601795	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs624536	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs625312	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs652193	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs654857	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs654870	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs664936	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs684505	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs688343	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8032298	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	esv1843037	chr15:59005922-59115159	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	esv1798487	chr15:59027139-59213678	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	nsv428638	chr15:59032300-59126567	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59064600-59102800	Weak transcription	Lung	lung
2	chr15:59064600-59102800	Weak transcription	Pancreas	Pancrea
3	chr15:59064600-59103200	Weak transcription	Esophagus	oesophagus
4	chr15:59064600-59145600	Weak transcription	Gastric	stomach
5	chr15:59064800-59095400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:59065200-59117800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:59065800-59094600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr15:59065800-59095000	Weak transcription	Fetal Thymus	thymus
9	chr15:59065800-59102800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr15:59065800-59103200	Weak transcription	NH-A	brain
11	chr15:59065800-59142800	Weak transcription	Aorta	Aorta
12	chr15:59066000-59095000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr15:59066000-59102400	Weak transcription	HSMM	muscle
14	chr15:59066200-59095000	Weak transcription	Osteobl	bone
15	chr15:59066200-59095600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr15:59066400-59091000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:59066400-59095000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:59066400-59095000	Weak transcription	Fetal Intestine Large	intestine
19	chr15:59066600-59102400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr15:59067000-59094600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:59067000-59094800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr15:59067000-59102400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr15:59067000-59102800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr15:59067000-59102800	Weak transcription	NHDF-Ad	bronchial
25	chr15:59067000-59157800	Weak transcription	Hela-S3	cervix
26	chr15:59067200-59094800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr15:59067200-59095000	Weak transcription	Fetal Lung	lung
28	chr15:59067200-59103200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr15:59067400-59102600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr15:59067400-59102800	Weak transcription	Brain Angular Gyrus	brain
31	chr15:59067400-59111400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr15:59067800-59094800	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr15:59067800-59105000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr15:59068000-59086000	Weak transcription	Fetal Kidney	kidney
35	chr15:59068600-59085800	Weak transcription	HepG2	liver
36	chr15:59068600-59088000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr15:59068600-59090000	Weak transcription	Small Intestine	intestine
38	chr15:59068600-59094800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr15:59069400-59103600	Weak transcription	Brain Germinal Matrix	brain
40	chr15:59069600-59106000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr15:59069600-59119000	Weak transcription	Fetal Brain Male	brain
42	chr15:59069800-59092800	Weak transcription	Primary B cells from peripheral blood	blood
43	chr15:59069800-59095400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr15:59069800-59102600	Weak transcription	HUVEC	blood vessel
45	chr15:59069800-59121400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr15:59071800-59088000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr15:59071800-59094800	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr15:59072000-59105600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr15:59073200-59089600	Weak transcription	K562	blood
50	chr15:59075000-59089800	Weak transcription	Brain Cingulate Gyrus	brain

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