Variant report

Variant	rs28533476
Chromosome Location	chr8:9945513-9945514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10087178	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17151050	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17151069	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56172028	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60227095	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60799208	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7012397	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9914800-9947200	Weak transcription	Left Ventricle	heart
2	chr8:9929600-9947200	Weak transcription	Aorta	Aorta
3	chr8:9940000-9949400	Weak transcription	Spleen	Spleen
4	chr8:9940200-9948600	Weak transcription	Primary T cells from cord blood	blood
5	chr8:9941600-9947200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:9942000-9947200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:9943800-9945800	Enhancers	HMEC	breast
8	chr8:9944200-9945800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:9944200-9947800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr8:9944400-9945800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr8:9944400-9945800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr8:9944400-9945800	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr8:9944600-9945800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr8:9944800-9945600	Enhancers	Primary B cells from cord blood	blood
15	chr8:9944800-9945800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:9944800-9946200	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr8:9945200-9945800	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr8:9945200-9945800	Enhancers	NHEK	skin
19	chr8:9945200-9947000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:9945200-9947000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr8:9945200-9947000	Weak transcription	NH-A	brain
22	chr8:9945200-9947200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:9945200-9947200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:9945200-9947200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr8:9945200-9947800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr8:9945200-9950000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr8:9945400-9945800	Enhancers	Primary B cells from peripheral blood	blood

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