Variant report

Variant	rs56172028
Chromosome Location	chr8:9951783-9951784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10087178	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17151050	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17151069	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28533476	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60227095	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60799208	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7012397	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1034343	chr8:9948342-10014155	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9948200-9952800	Weak transcription	NHDF-Ad	bronchial
2	chr8:9951000-9951800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
3	chr8:9951200-9951800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr8:9951400-9952000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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