Variant report

Variant	rs28534404
Chromosome Location	chr4:98094355-98094356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10006003	1.00[AMR][1000 genomes]
rs10009428	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10012971	0.85[AFR][1000 genomes]
rs10014911	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10023319	0.85[AFR][1000 genomes]
rs10030440	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13353538	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28380279	0.95[AFR][1000 genomes]
rs28413638	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28424036	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28489826	1.00[AMR][1000 genomes]
rs28542097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28753218	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9998807	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1002766	chr4:98006688-98128416	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv537192	chr4:98006688-98128416	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98093600-98095000	Enhancers	Dnd41	blood
2	chr4:98093800-98095000	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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