Variant report
| Variant | rs28542097 |
|---|---|
| Chromosome Location | chr4:98121579-98121580 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:98121338..98122914-chr4:98123026..98125277,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10006003 | 1.00[AMR][1000 genomes] |
| rs10009428 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10012971 | 0.85[AFR][1000 genomes] |
| rs10014911 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10023319 | 0.85[AFR][1000 genomes] |
| rs10030440 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13353538 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28380279 | 0.95[AFR][1000 genomes] |
| rs28413638 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28424036 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28489826 | 1.00[AMR][1000 genomes] |
| rs28534404 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28753218 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9998807 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879640 | chr4:97711707-98697586 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1002766 | chr4:98006688-98128416 | Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv537192 | chr4:98006688-98128416 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:98121200-98122000 | Enhancers | Dnd41 | blood |
