Variant report

Variant	rs28535486
Chromosome Location	chr9:71414374-71414375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71408861..71411177-chr9:71411346..71415020,3	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10114785	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10117789	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10119445	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10124098	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10869323	0.97[ASN][1000 genomes]
rs11143739	0.88[ASN][1000 genomes]
rs11143755	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11143976	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12336788	0.87[EUR][1000 genomes]
rs12337137	0.81[AMR][1000 genomes]
rs12338217	0.81[AMR][1000 genomes]
rs12341558	0.91[EUR][1000 genomes]
rs12350205	0.81[AMR][1000 genomes]
rs12352746	0.87[EUR][1000 genomes]
rs1414945	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2027023	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2039624	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28371821	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28375745	0.87[EUR][1000 genomes]
rs3750375	0.81[AMR][1000 genomes]
rs3750376	0.81[AMR][1000 genomes]
rs3829061	0.81[AMR][1000 genomes]
rs4237272	0.83[EUR][1000 genomes]
rs56994943	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58984094	0.81[AMR][1000 genomes]
rs61453631	0.81[AMR][1000 genomes]
rs61547334	0.81[AMR][1000 genomes]
rs6560361	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7021259	0.83[AFR][1000 genomes]
rs7035068	0.81[AMR][1000 genomes]
rs7041194	0.81[AMR][1000 genomes]
rs7048275	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73646761	0.81[AMR][1000 genomes]
rs7847379	0.81[AMR][1000 genomes]
rs7849727	0.81[AMR][1000 genomes]
rs7852244	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7855274	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7863960	0.81[AMR][1000 genomes]
rs953036	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2422258	chr9:71234845-71663340	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1017903	chr9:71276951-71690579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv1053402	chr9:71399722-71819949	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv540146	chr9:71399722-71819949	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv1043689	chr9:71399922-71800338	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv540147	chr9:71399922-71800338	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
9	nsv1047540	chr9:71401918-71803639	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
10	nsv1050741	chr9:71405224-71450033	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv540148	chr9:71405224-71450033	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71397200-71417400	Weak transcription	Lung	lung
2	chr9:71399000-71420200	Weak transcription	Fetal Stomach	stomach
3	chr9:71403200-71419800	Weak transcription	Pancreas	Pancrea
4	chr9:71404600-71431400	Weak transcription	HepG2	liver
5	chr9:71409000-71417400	Weak transcription	Right Atrium	heart
6	chr9:71409200-71421000	Weak transcription	Placenta	Placenta
7	chr9:71410000-71417000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr9:71410000-71417400	Weak transcription	Left Ventricle	heart
9	chr9:71410000-71417600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr9:71410200-71415000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr9:71410200-71419200	Weak transcription	Gastric	stomach
12	chr9:71410200-71419600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:71410200-71419800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr9:71410200-71428600	Weak transcription	Aorta	Aorta
15	chr9:71410400-71417200	Weak transcription	Fetal Intestine Large	intestine
16	chr9:71410400-71417200	Weak transcription	Fetal Intestine Small	intestine
17	chr9:71410400-71420200	Weak transcription	Stomach Mucosa	stomach
18	chr9:71413600-71414600	Weak transcription	Primary B cells from cord blood	blood
19	chr9:71413600-71417400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:71413800-71415400	Weak transcription	Fetal Heart	heart
21	chr9:71413800-71416200	Weak transcription	GM12878-XiMat	blood
22	chr9:71413800-71416600	Weak transcription	Primary B cells from peripheral blood	blood
23	chr9:71414000-71420200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:71414000-71437000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr9:71414000-71445000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr9:71414200-71416600	Weak transcription	Rectal Mucosa Donor 29	rectum

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